AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02134 ATGCTATGCCTTCCCACACTCGGAAAACCATGCGTTTCCACCACCACAAAAAAACTTCGCTCTCCGGCAGAGGTGGTTCACAAGACTCGATCCCTTCTCCTCTATTCCAAAAACTCCCCCAATCTCACCTCCCAGATGACAGAGTTGAGCTCACTAGTTAGGGAGTTAAAGTTGATTCTTTATGGTGATGATGACTCCGAGCCTTCTGAAGAAGCTTGTGCCCAATTGACTCAAGAGTTCTTTAAGGAAGACACATTCCGTCTCCTTGTGATCTTTCTTCCAAAATACGAGGATCCTCAATTAGCTCTCCATTATGGTAGGATGTTAAAGGAGTGCCTACGTCATCAAATCGTTGCAGGTTACATATTGGAACCAAGTCAACAGAGGAAGTTCTTCGATTACATACAACATCCAAGCTTCGATATTGCTGCAGATGCTGCAGATACATTCAAGGACCTTTTGACTAGGCATAAGTCTACTGTATCTGAATCTCTGTCCACAAACTATTGTTGGTTTTTTACTGAATTTAACCAAAGGCTACTGAAATCTGCAAACTATATCACCAGAAGACAAGCTGTTAAGAAATATATTGTCGTTAACATTGGGATGTTGATATTCAAATGTTGGTTGTTGCCTTTCGTTACAGTTATTGGGATGCATATTGCTCGACCGTTCGAATTCTTATGTTATGACACGCTACGTCAACTCAAAAGACAACCTTATAATTCTGATGAATCTTCTAAGGGTATGGCAGAGTTTTCTTACTATATTTGGCAGCTTTTTGTAGCAAATAAAAACAAGCCTCCTGAAATA 813 40.47 MLCLPTLGKPCVSTTTKKLRSPAEVVHKTRSLLLYSKNSPNLTSQMTELSSLVRELKLILYGDDDSEPSEEACAQLTQEFFKEDTFRLLVIFLPKYEDPQLALHYGRMLKECLRHQIVAGYILEPSQQRKFFDYIQHPSFDIAADAADTFKDLLTRHKSTVSESLSTNYCWFFTEFNQRLLKSANYITRRQAVKKYIVVNIGMLIFKCWLLPFVTVIGMHIARPFEFLCYDTLRQLKRQPYNSDESSKGMAEFSYYIWQLFVANKNKPPEI 271
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02134 271 Gene3D - 92 271 IPR011989 -
Ccar2g02134 271 Gene3D - 13 91 IPR011989 -
Ccar2g02134 271 Pfam Mo25-like 90 194 IPR013878 -
Ccar2g02134 271 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 16 96 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Ccar2g02134 271 SUPERFAMILY ARM repeat 20 195 IPR016024 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02134 K08272 calcium binding protein 39
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr1:49063296 Ccar2g02134 Ccar-Chr2:68541420 dispersed