AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02143 AAAAAGAAAAACAAAAAGTTAAAGGAAAATAGGAAAGCCCTAAATGAGCCCAAAGAGTGTATTCATCTTGGCGAGCTACTTTCGATTTCTATTGCAATTTTGCAATCGAAAGGGAGGGCAGCCATACCCATAGCCATTCTTCCAATCCAACTTCAGTCACTTTCTTTGGAAATCGCATTCATGGCCACACACTTCTTGCTTCGACTCTCCCCCAACCTAACTCCTCCTTCCTCCTCCACCGCCCCTCCTCTTTCTCCCTTCTTCTTCAAAACATGCCCTTCTCCTCGCCCCCCGCCGCGACGTCGCCCTTCCGCCGTTTCTTGTTCTTTTACCTCGATGGAGTCTGCAAAGATTAAGGTCGTCGGTGTCGGTGGCGGTGGCAACAATGCTGTTAACCGAATGATTGGTAGCGGATTGCAGATCGGAGAACTTTTGACTCGTGGACTTGGTACCGGCGGGAATCCACTTTTAGGAGAACAGGCTGCAGAGGAATCAAAAGAAGCCATTGGTAATGCTCTTAAAGGATCAGATCTTGTGTTCATAACAGCAGGTATGGGTGGTGGTACTGGTTCTGGTGCTGCTCCAGTTGTAGCCCAGATAGCAAAAGAAGCCGGATATTTGACCGTTGGTGTCGTAACTTATCCATTCAGCTTTGAAGGACGCAAAAGATCAGCTTTGGAGGCTATTGAGAAGCTGCAAAAGAATGTTGACACACTTATCGTGATCCCGAATGACCGTTTATTGGATATTGCTGATGAGCAGACACCGCTTCAGGATGCTTTTCTTCTTGCTGATGATGTACTCCGCCAAGGAGTTCAAGGGATTTCAGATATAATTACGATACCTGGGCTGGTAAACGTGGACTTTGCGGATGTTAAAGCAGTGATGAAAGATTCTGGAACCGCAATGCTCGGTGTGGGAGTTTCGTCCAGCAAAAACCGAGCTGAAGAAGCAGCGGAACAAGCAACTCTTGCTCCTTTAATTGGATCGTCGATCAAATCCGCTACTGGAGTTAGATACAACGGTGAGATTCATGTCACAATTGTTGCTACAGGATTTGCACAATCGTTTCAGAAATCTCTTCTGGCCGACCCAAAAGGAGCAAAACTTGTTGATAGAAATCAAGAAACCGCACAGCCTTCGATTCCCGTGACCACGTCCTCTCCATCTCCCTCTCGTTCTAGGAAACTTTTCTTT 1197 46.7 KKKNKKLKENRKALNEPKECIHLGELLSISIAILQSKGRAAIPIAILPIQLQSLSLEIAFMATHFLLRLSPNLTPPSSSTAPPLSPFFFKTCPSPRPPPRRRPSAVSCSFTSMESAKIKVVGVGGGGNNAVNRMIGSGLQIGELLTRGLGTGGNPLLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIKSATGVRYNGEIHVTIVATGFAQSFQKSLLADPKGAKLVDRNQETAQPSIPVTTSSPSPSRSRKLFF 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02143 399 SUPERFAMILY Tubulin C-terminal domain-like 282 357 IPR008280 -
Ccar2g02143 399 ProSitePatterns FtsZ protein signature 2. 177 198 IPR020805 GO:0005525(InterPro)
Ccar2g02143 399 SMART Tubulin-C-4 285 362 IPR018316 -
Ccar2g02143 399 CDD FtsZ-type1 139 352 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Ccar2g02143 399 MobiDBLite consensus disorder prediction 373 399 - -
Ccar2g02143 399 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 139 341 IPR045061 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Ccar2g02143 399 Pfam FtsZ family, C-terminal domain 300 338 IPR024757 -
Ccar2g02143 399 MobiDBLite consensus disorder prediction 374 399 - -
Ccar2g02143 399 SMART Tubulin-4 117 283 IPR003008 GO:0005525(InterPro)
Ccar2g02143 399 Gene3D Tubulin-FtsZ, GTPase domain 114 354 IPR036525 -
Ccar2g02143 399 PRINTS Cell division protein FtsZ signature 178 198 IPR003008 GO:0005525(InterPro)
Ccar2g02143 399 PRINTS Cell division protein FtsZ signature 290 311 IPR003008 GO:0005525(InterPro)
Ccar2g02143 399 PRINTS Cell division protein FtsZ signature 206 227 IPR003008 GO:0005525(InterPro)
Ccar2g02143 399 PRINTS Cell division protein FtsZ signature 267 289 IPR003008 GO:0005525(InterPro)
Ccar2g02143 399 SUPERFAMILY Tubulin nucleotide-binding domain-like 116 286 IPR036525 -
Ccar2g02143 399 Hamap Cell division protein FtsZ [ftsZ]. 113 398 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Ccar2g02143 399 Pfam Tubulin-FtsZ family, GTPase domain 139 251 IPR003008 GO:0005525(InterPro)
Ccar2g02143 399 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 186 192 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02143 K03531 cell division protein FtsZ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:68618895 Ccar9g00490 Ccar-Chr9:12069166 dispersed
Ccar Ccar-Chr2:68618895 Ccar5g00458 Ccar-Chr5:6142737 transposed