Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g02144	ATGAACATCGTAGAGAAAGAGAGCATTGAGGTGATTGCACAGAGCATCGGCGTTGGGAATTTATCGCCGGATGTTTTGCCTTCTTTAGCCGCCGACATTGAATACCGTATTAGCGAGATCATGCAGGAGGCTGTAAAATGTATGCGTCATGCAAAGCGGACTGCTATGACTTCAGATGATGTGGATAGTGCCCTTGAACTAAGAAAAATGGAGCCAATATATGTTGCATCCGGGGATTCTTTGCGATTTAAAAGAGCTGCCAGGCATAAGGATTTGTTCTATGTTGAGGACAAGGATGTAGAATTTAGAGAGGTGATTGCAGCCGCCCTTCCAAAAGCACCTCCAGATACAGCTGTAGTCAATCACTGGCTGGCTATTGAAGGGGTACAACCTGCTATTCCTGAAAATGCTTCGCTGGAAGCACTTTTGACCCCATTCGATAATAAGAAACCTGATTACAAAGAAGATGGGGTTTCAATTGACATTAAAACTCCTGTGAAACATGTGCTCTCTATAGAGCTTCAGCTTTACTTTGAAAAGATCACAGACCTCACTGTAAGTCGATCAAACTCAATCATCTTTAACAAAGCATTGTTGAGTTTGGCGACTGACGTAGGACTCCATCCTTTGGTTCCTTATTTCATATATTTCGTAGCTGAAGAGGTTACTCGTAATTTAAACAACTTCCAGCTTCTTTTTGCTTTGATGCGCCTTGTTCGGAGTCTTCTGCAGAATCCATTTCTGCACATTGAACCATACCTGCACCAACTGATGCCGTCTGTAATGACCTGCCTTGTTGCAAAAAGCCTTGGGAATAAGTTAACTGATAACCACTGGGAACTTCGAAACTTCACAGCTAACCTGGTGGCTTCAATATGCAGAAGGTTTGGCAATGGGTATCATAACCTCCAATTACGTGTGACTAGGACTCTTCTTCATGCGTTTTTGGATCCAGCAAAAGCATTTCCCCAACATTATGGTGCGATAAAAGGGATTACTGCCCTTGGATCAAGCGTGGTGCGTCTGCTTTTGCTGCCAAATCTTGATCCATATCTGCATTTTTTAGAACCAGAAATGCAACTTGAGAATCAGAAAAATGAGAGCAGGAGGCATGAGGCCTGGCAAGTGCATGGGGCTTTAATGCTTAAGATGATTCCCAATCTGTTTTCTCCACCAACACATGCCATCTGGAAGAGTAATGGAAATGACTTGACTATAAACCCAAATAAAAGGAAGGCGGGCATAAACAACTTGATGATGGAGCAGACACTTAAAAAAACAGCAACAGGTGACGGTTCTGTAGGAGGGCAGCATTTAGTGAAGGTCGAGGTGCCAGGAGCCAGCAGCGGATTTTCAATAACTCGTGGAGCTTCTGATGTCGGGGTGCACCCATTACCAAGGTTTTTGCCAAATGACACCATTCCGGGAAGCAGTGGTCGGAGAGACAAGTTTGGTAGTGTAGCTCAAACATCATCTTCGGTGGCCGTGGCCCGAGCATGGAAAAAAGAAATAAATGCTGGACACTTGCTTCCCAAGCTTTATGATCTTTTTGGTGAAAGCATGCTTCCGTTTGTACTTTCCCCAGAATTGTGTAATATATTCATCTGA	1608	43.78	MNIVEKESIEVIAQSIGVGNLSPDVLPSLAADIEYRISEIMQEAVKCMRHAKRTAMTSDDVDSALELRKMEPIYVASGDSLRFKRAARHKDLFYVEDKDVEFREVIAAALPKAPPDTAVVNHWLAIEGVQPAIPENASLEALLTPFDNKKPDYKEDGVSIDIKTPVKHVLSIELQLYFEKITDLTVSRSNSIIFNKALLSLATDVGLHPLVPYFIYFVAEEVTRNLNNFQLLFALMRLVRSLLQNPFLHIEPYLHQLMPSVMTCLVAKSLGNKLTDNHWELRNFTANLVASICRRFGNGYHNLQLRVTRTLLHAFLDPAKAFPQHYGAIKGITALGSSVVRLLLLPNLDPYLHFLEPEMQLENQKNESRRHEAWQVHGALMLKMIPNLFSPPTHAIWKSNGNDLTINPNKRKAGINNLMMEQTLKKTATGDGSVGGQHLVKVEVPGASSGFSITRGASDVGVHPLPRFLPNDTIPGSSGRRDKFGSVAQTSSSVAVARAWKKEINAGHLLPKLYDLFGESMLPFVLSPELCNIFI	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g02144	535	Gene3D	-	166	371	IPR046344	GO:0006367(InterPro)
	Ccar2g02144	535	SUPERFAMILY	Histone-fold	3	66	IPR009072	GO:0046982(InterPro)
	Ccar2g02144	535	CDD	TAF6C	167	381	IPR011442	GO:0006367(InterPro)
	Ccar2g02144	535	Gene3D	Histone, subunit A	1	67	IPR009072	GO:0046982(InterPro)
	Ccar2g02144	535	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	2	528	IPR037796	GO:0000124(InterPro)\|GO:0003713(PANTHER)\|GO:0005669(PANTHER)\|GO:0005669(InterPro)\|GO:0006367(InterPro)\|GO:0016251(PANTHER)\|GO:0016251(InterPro)\|GO:0046695(InterPro)\|GO:0051123(PANTHER)
	Ccar2g02144	535	Pfam	TATA box binding protein associated factor (TAF)	2	65	IPR004823	-
	Ccar2g02144	535	FunFam	transcription initiation factor TFIID subunit 6	166	371	-	-
	Ccar2g02144	535	Pfam	TAF6 C-terminal HEAT repeat domain	166	348	IPR011442	GO:0006367(InterPro)
	Ccar2g02144	535	SMART	TAF-cls	2	68	IPR004823	-
	Ccar2g02144	535	SUPERFAMILY	ARM repeat	198	390	IPR016024	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g02144	K03131	transcription initiation factor TFIID subunit 6

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr2:68624473	Ccar8g00910	Ccar-Chr8:22860567	dispersed