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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02149 ATGCCTTCGTCTATGTTTTCTATGCGTGCCTCCCATGGCACCACGTTAGCTCCTGAACAAAGCACGATCTTCCGTGATTCAATGTACAATAAGCCAAATTTCTTCTATAAGCATCTACTTTGTTTCAAGAGGAGTTGCGTATCATCTAACCTGGCACACTCGAGTGTGTCCCAGAAGGATATAATCCAATGTAGGGCGGTAGAGGTGGCAAGTAACCGTACCTTTTTAAAGGGAGAAAAATTTCAACTTCATGATGTGATTGAAGCACAACAATTTGATAGAGATATTCTGAGCGCGATTTTTGAAGTGGCCCGTGAAATGGAAATAATCGAGAAGAAGTCACGTGGAAGCCAGCTTTTGAATGGTTATCTAATGGCTACACTCTTTTACGAGCCTTCAACTAGGACTAGGCTTTCATTTGAGTCAGCAATGAAGCGGTTGGGTGGGGAAGTTTTGACAACAGAAAATGCACGAGAGTTCTCTTCTGCTGCAAAAGGAGAGACACTTGAAGATACAATTAGAACGGTGGAAGGGTACACAGACATAATTGTGATGAGGCACTTTGAAAGTGGTGCTGCTAGAAGAGCAGCCATGACAGCTAACATTCCCATTATTAATGCTGGGGATGGTCCAGGGGAGCATCCTACTCAGGCTCTTCTCGATGTATACACTATTGAGAGAGAGATAGGAAAGTTGGATGGCATTAAAGTTGGACTTGTTGGGGATCTTGCTAACGGCCGAACTGTACGGTCTCTTGCATATCTTTTAGCCAAATATAATGATGTGAAGGTCTACTTTGTGTCACCAGAGGAGGACATTAAAGAGTACTTAACATCGAAGGGAGTTGAATGGGAAGAAAGTGCAGATCTAAAAGAGGTGGCATCCAAATGCGATGTGGTGTACCAGACTCGCATCCAAAAAGAACGTTTTGGAGAGAGAACTGATCTGTATGAGGAAGCTTGCGGGAAGTACATTGTGGATCGAGAAATCTTGGATGTCATGCAGAAACATGCTGTCATAACCGTGGATGTAGATGGGGATCCGAGGGCAGCCTACTTTAGACAAGCGAAAAACGGACTGTACATTAGGATGGCTTTGTTGAAGCTCTTGCTTCTTGGTTGGTGA 1125 43.82 MPSSMFSMRASHGTTLAPEQSTIFRDSMYNKPNFFYKHLLCFKRSCVSSNLAHSSVSQKDIIQCRAVEVASNRTFLKGEKFQLHDVIEAQQFDRDILSAIFEVAREMEIIEKKSRGSQLLNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYTDIIVMRHFESGAARRAAMTANIPIINAGDGPGEHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKVYFVSPEEDIKEYLTSKGVEWEESADLKEVASKCDVVYQTRIQKERFGERTDLYEEACGKYIVDREILDVMQKHAVITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 374
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02149 374 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 129 136 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 81 371 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 FunFam Aspartate carbamoyltransferase 85 217 - -
Ccar2g02149 374 FunFam Aspartate carbamoyltransferase 2 218 358 - -
Ccar2g02149 374 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 233 369 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 PRINTS Aspartate carbamoyltransferase signature 159 168 - -
Ccar2g02149 374 PRINTS Aspartate carbamoyltransferase signature 119 141 - -
Ccar2g02149 374 PRINTS Aspartate carbamoyltransferase signature 352 366 - -
Ccar2g02149 374 PRINTS Aspartate carbamoyltransferase signature 213 230 - -
Ccar2g02149 374 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 214 225 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 336 359 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 129 148 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 Gene3D Aspartate-ornithine carbamoyltransferase 86 367 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 85 226 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 NCBIfam aspartate carbamoyltransferase 85 371 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Ccar2g02149 374 Gene3D Aspartate-ornithine carbamoyltransferase 214 358 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ccar2g02149 374 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 78 371 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02149 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr10:8129339 Ccar2g02149 Ccar-Chr2:68689337 dispersed