AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02151 ATGTCTTCCATAGATTCCGGCGATTCACGGGGAAGATTATCGGAGAAGATCATCTACACCTACGGCGTCGACATCGTCTCTGGCGACTATGTCGACTGGGAAACAGGCGAAGGAACAGTAAAATGCACGATTAACATGGAAGAATCAGTTGCCGCTGTAGAATCCATCTTAGGATACACATTCAACAACAAGAGTCTGTTGGAAGAAGCCTTGACGCATCCTTCTTACTCCGAAAGTCCTTCTTATCAACGGCTTGAGTTCGTCGGTGATGCTGTCCTTGGACTCGTAATTTCCAATTTCGTTTTCGTCACTTACCCTGATCTCGACCCTGGTCAGCTATCTCTTCTTCGTTCCGCCAATATTAGCACCGAGAAACTCGCTAGGGTTGCGGTCAACCACGGCCTTTACAAATACGTGCGCCACAAAGCCGCCGCGCTTAATGACAAGGTTAGGGAATTTGTGATGGCGGTTCAGGAAGAAGATAATATGGTTGTTCATGGTGGACATATGAAAGCCCCTAAGGTTCTTGCGGATATTGTTGAATCGGTGGCTGCAGCTGTGTATATTGATTGTGGATCAAACTTGCAAATCATATGGATGATCATGAGAGTGCTACTTGAACCTATTGCGATGCTAAATGACATCGAGAAACAACCGCAGCCTATTACATTGCTATACGAGGCATGTCAGAAGAATCAGAAGGATGTTATTATAAGGCACTGGAGGAAAGGTGACAGAAACATCGCGAGTGTTTACGTAGATGGCAGATTTGTTGCCTCTGGTTCTTCGGACAATAAAGAGAACGCAAAGCTGCATGCAGCCGAGGCTGCTTTCTCCAAGTTAACCAGCTCCAAAAGCAGTGACCCAGTGAGTACACAGATGTATGATGATTTTAACAAAACCATTGAGGTTGAAAGTGCGAAGCAGAGAGTACACGAGCTTTGCAATAAGAAAAGGTGGTCCAAGCCGATTTACAGAATTGAGAGTCAGTCGGGACCTGCACACGAAAGAAGATATATATCGTCGGTTACAATTAAAGTTTGTGACGTGATTCTTGGTGTGGTGGGAGATGAGAAGTCGAGAGTTAAGGAAGCAGAGAGTTCTGCGGCCGTGGCAATGCTTTGTGCACTGCGAGAATCCGGATATATATGA 1152 45.66 MSSIDSGDSRGRLSEKIIYTYGVDIVSGDYVDWETGEGTVKCTINMEESVAAVESILGYTFNNKSLLEEALTHPSYSESPSYQRLEFVGDAVLGLVISNFVFVTYPDLDPGQLSLLRSANISTEKLARVAVNHGLYKYVRHKAAALNDKVREFVMAVQEEDNMVVHGGHMKAPKVLADIVESVAAAVYIDCGSNLQIIWMIMRVLLEPIAMLNDIEKQPQPITLLYEACQKNQKDVIIRHWRKGDRNIASVYVDGRFVASGSSDNKENAKLHAAEAAFSKLTSSKSSDPVSTQMYDDFNKTIEVESAKQRVHELCNKKRWSKPIYRIESQSGPAHERRYISSVTIKVCDVILGVVGDEKSRVKEAESSAAVAMLCALRESGYI 383
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02151 383 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 207 283 IPR014720 -
Ccar2g02151 383 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 306 379 IPR014720 -
Ccar2g02151 383 CDD RIBOc 65 209 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ccar2g02151 383 Gene3D Ribonuclease III domain 40 212 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ccar2g02151 383 Pfam Double-stranded RNA binding motif 221 281 IPR014720 -
Ccar2g02151 383 SUPERFAMILY RNase III domain-like 49 209 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ccar2g02151 383 ProSitePatterns Ribonuclease III family signature. 83 91 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ccar2g02151 383 Gene3D - 303 379 - -
Ccar2g02151 383 SMART DRBM-3 307 378 IPR014720 -
Ccar2g02151 383 SMART DRBM-3 221 282 IPR014720 -
Ccar2g02151 383 SUPERFAMILY dsRNA-binding domain-like 174 281 - -
Ccar2g02151 383 ProSiteProfiles Ribonuclease III family domain profile. 50 192 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ccar2g02151 383 Hamap Ribonuclease 3 [rnc]. 53 374 IPR011907 GO:0003723(InterPro)|GO:0004525(InterPro)|GO:0006364(InterPro)
Ccar2g02151 383 PANTHER DICER-RELATED 42 355 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Ccar2g02151 383 Gene3D - 216 292 - -
Ccar2g02151 383 SMART riboneu5 65 217 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ccar2g02151 383 Pfam Ribonuclease III domain 83 192 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ccar2g02151 383 SUPERFAMILY dsRNA-binding domain-like 289 377 - -
Ccar2g02151 383 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 306 377 - -
Ccar2g02151 383 FunFam Endoribonuclease dicer-like 1 44 213 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02151 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:68712566 Ccar2g01876 Ccar-Chr2:65175420 transposed