Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g02160	ATGCCAAAAATTCCGCTTTGGGATTTGCCTGAACTGCCGAAGAATCAGCTTCCTCCTCATCTTTACCTCCAGAAAACTCGAGTTTTCTGCAATAACGATGCTCCCACCCATACAGAGAACATACACTACTCTGGTGCATATGCAGCATTGGGAGTCGATAACAGCTTAAGGTTGGATGAATTCAGGAAAAACTTCAAAGTTAAGGTGATTAAGCTCAATGAAGAAGACATGGAGTTTGATTTGATCGGGATTGATGCTTCTATTGCGAATGCTTTTAGAAGAATCCTAATATCAGAGCTGCCAACTATGGCCATTGAGAAGGTTCTTGTTGCTAACAGTTCATCGGTGGTACAAGATGAAGTACTTGCGCAACGACTGGGTCTCGTACCAATAAAGGTTGACCCAAGGCTGTTTGATTATATGTCAGAAAATGATGTTCCTAACCAGAAAAACTCCATTGTTTTCAAACTTCATTACAAATGTGATCGAGGATCTGGTGAACGACGCACAGTGTACTCTCATGATCTAAAGTGGTTACCGTTTGGGAGTGAATATGTTCTGCCCACCGAAAGCTCTTCAGATTCAACATCAAAACCAAAGACGTACACATCATTTACTTCCAGCCAAGACTCCCTGCCAGAATTTGCCAATAATCCTATCACCGTCACACCTGGTATCATTATATCAAAACTTGGGCCTGGGCAGGAAATCGAGCTAGAAGCACATGCTGTAAAAGGTGTTGGTAAAACACATGCCAAGTGGTCTCCTGTGGCCACTTCTTGGTACAGGATGCTCCCTGAGGTTATATTGCTGCAAGACATTGAAGACGATGATGCTCATAAACTTGTAAAGAAGTGCCCAGTTAATGTGTTTGATATTGAAGACGTGGGTCGGGAGAGGGCAACCGTGGCTCGACCAAGATCTTGTACTTTGTGCAGGGAATGCATTAGAGAGCCCGGATGGGAGGAAAAGGTGGCACTACGACGTGTGAAAGATCACTTTATTTTCACTATAGAGTCCACCGGAGCTTTGCCCCCGGAGGTGTTATTTACTGAAGCCGTGAAGATCTTAGAAGACAAGTGTGAACGCGTGATAACCGAGCTCTCATAA	1110	43.96	MPKIPLWDLPELPKNQLPPHLYLQKTRVFCNNDAPTHTENIHYSGAYAALGVDNSLRLDEFRKNFKVKVIKLNEEDMEFDLIGIDASIANAFRRILISELPTMAIEKVLVANSSSVVQDEVLAQRLGLVPIKVDPRLFDYMSENDVPNQKNSIVFKLHYKCDRGSGERRTVYSHDLKWLPFGSEYVLPTESSSDSTSKPKTYTSFTSSQDSLPEFANNPITVTPGIIISKLGPGQEIELEAHAVKGVGKTHAKWSPVATSWYRMLPEVILLQDIEDDDAHKLVKKCPVNVFDIEDVGRERATVARPRSCTLCRECIREPGWEEKVALRRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g02160	369	Gene3D	-	67	360	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Ccar2g02160	369	SUPERFAMILY	RBP11-like subunits of RNA polymerase	63	368	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Ccar2g02160	369	Hamap	DNA-directed RNA polymerase subunit Rpo3 [rpo3].	66	368	IPR022842	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Ccar2g02160	369	CDD	RNAP-I-II-AC40	65	367	IPR033901	GO:0001054(InterPro)\|GO:0001056(InterPro)
	Ccar2g02160	369	PANTHER	DNA-DIRECTED RNA POLYMERASE	25	369	IPR050518	GO:0001054(PANTHER)\|GO:0001056(PANTHER)\|GO:0003899(PANTHER)\|GO:0005666(PANTHER)\|GO:0005736(PANTHER)
	Ccar2g02160	369	SUPERFAMILY	Insert subdomain of RNA polymerase alpha subunit	101	256	IPR036643	-
	Ccar2g02160	369	Pfam	RNA polymerase Rpb3-Rpb11 dimerisation domain	78	361	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Ccar2g02160	369	SMART	rpoldneu2	76	367	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Ccar2g02160	369	Pfam	RNA polymerase Rpb3-RpoA insert domain	122	253	IPR011262	GO:0003899(InterPro)\|GO:0006351(InterPro)\|GO:0046983(InterPro)
	Ccar2g02160	369	Gene3D	-	102	252	IPR036643	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g02160	K03027	DNA-directed RNA polymerases I and III subunit RPAC1

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr17:5854491	Ccar2g02160	Ccar-Chr2:68842432	dispersed