AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02171 ATGGCGGAAACAGAGACGTTTGCTTTCCAAGCTGAGATCAACCAGTTGTTGAGTCTAATTATCAACACTTTCTACAGCAACAAGGAGATCTTCCTTCGTGAGCTTGTTAGCAACGCCTCCGATGCTTTGGACAAGATTCGTTTTGAGAGCTTGACTGATAAGAGCAAGCTAGATGCTCAACCAGAGCTGTTCATCCACATCATTCCCGATAAGGCCAACAACACACTGACCATCATTGACAGTGGAATTGGAATGACTAAAGCAGATTTGGTGAATAATCTAGGTACCATTGCTCGTTCTGGTACCAAAGAATTCATGGAAGCCATTGCTGCTGGTGCTGATGTTAGCATGATTGGACAATTTGGTGTCGGTTTCTACTCAGCGTATCTGGTTGCAGAGAAAGTCATTGTCACCACAAAACACAACGATGATGAACAGTATGTTTGGGAGTCACAGGCTGGTGGGTCATTCACAGTAACCCGGGATGAAGGTGAACCCCTTGGCAGGGGCACTAAAATTGTCCTTTATCTCAAGGAGGACCAGCTTGAGTACCTTGAGGAGCGCAGGCTCAAGGATCTGATTAAGAAGCACTCTGAATTCATCAGCTACCCAATCTCCCTTTGGGTCGAGAAGACAACCGAGAAGGAAATATCCGATGATGAGGATGAAGAAGAGAAGAAAGATGAAGACGAAGAGAAGAAAGACGAGGAAGGCAAAGTTGAGGAGGTTGATGAAGAGAAGGAGAAGGAAGAGAAGAAA 759 45.19 MAETETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDAQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDEGEPLGRGTKIVLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEDEEKKDEEGKVEEVDEEKEKEEKK 253
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02171 253 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 3 248 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ccar2g02171 253 Pfam Hsp90 protein 183 252 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ccar2g02171 253 FunFam Heat shock cognate protein 2 227 - -
Ccar2g02171 253 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Ccar2g02171 253 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 4 212 IPR036890 -
Ccar2g02171 253 Coils Coil 226 253 - -
Ccar2g02171 253 CDD HATPase-Hsp90-like 14 201 IPR020575 -
Ccar2g02171 253 MobiDBLite consensus disorder prediction 216 244 - -
Ccar2g02171 253 MobiDBLite consensus disorder prediction 213 253 - -
Ccar2g02171 253 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Ccar2g02171 253 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Ccar2g02171 253 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Ccar2g02171 253 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Ccar2g02171 253 PRINTS 90kDa heat shock protein signature 169 186 IPR020575 -
Ccar2g02171 253 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Ccar2g02171 253 PRINTS 90kDa heat shock protein signature 187 205 IPR020575 -
Ccar2g02171 253 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 180 IPR003594 -
Ccar2g02171 253 Gene3D - 2 228 IPR036890 -
Ccar2g02171 253 SMART HKATPase-4 27 181 IPR003594 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02171 K04079 molecular chaperone HtpG
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Event-related genes

Select Gene_1 Gene_2 Event_name
38898 Ccar2g02171 Ccar6g00484
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:68963588 Ccar6g00484 Ccar-Chr6:15433181 dispersed
Ccar Ccar-Chr2:68919615 Ccar2g02171 Ccar-Chr2:68963588 proximal