Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g02210	ATGGGGAAGGGTCAGCCACCTCTATTGATAGGTTGGGGTCTCAGAAGCCGTCGTCCTCTGTGGTTGATAAGATACAAAAGAGTGGGAAGGATGTACTTTTGCAGGCCTGCCAAAAAGCAACTTTTGAAAAGGAAAATGTTGACTCTTTCCCCTCAAATCCATTCTTCTTCTGAGAATGGGCCGGAATTTTCTATTGCTAACTTGGATAAAGCCCATATGGATGTGGACCGAGATCTCCATGGTGATGTTTTAATAGAAGGCCTTAGTTCTCTGCTTGGGCCTATCCCTTTGGCCCAACAGTCGATTTTGGGTCCTTTTCCAGCAGGCCCAGGAATCGCCAGCAACCCTCGTCGTTCTCTTCTTCTTCATCAGTCACCAGTCTCGCTTGGTCACCAATTGATCACAGGTACATCGTCACTACTTGGTATGGAATGCCCTTTACAAGTCAAGTATACTTGCGGCAGCGGCAGCGGCAGCCACCACGCTTACCAAACCCTTCCATTCCAAATACGAATGGCCTTCTCATCCGCAACCCCACTTCACAGAATCACCGCCATTTCTTCTTCTTCTTCTTCTTCTTCACCGTTTTTCAAACCTTACCCTTCCCAACTATCCCTTCAATTCAACAAGATTGCCTCCTGCTCACCCAAGTCCTTTGCCCTCGCTAACCACCAAATGGGGCTGGACAAGGCTCCCGTTCTTCATGATCTCTCCATCCTCCAGCGCCCTGATTCTCTCGGCCGTTTTGGTAAGTATGGCGGCAAGTATGTTCCTGAAACCCTAATGTATGCTCTCTCCGAGCTTGAATCCGCTTTTAAAGCCCTCGCCACCGACCATCAATTCCAGAAGGAATTGGATGGGATATTGAAGGACTATGTTGGTAGGGAAAGCCCTCTTTATTTTGCACAACGGCTTACAGAGCATTATAAACGTCCCAACGGTGAAGGACCTGAAATCTATCTTAAGAGAGAAGATCTTAACCATACTGGTGCCCATAAGATCAACAATGCTGTTGCACAAGCCCTGCTGGCCAAGAAGTTAGGGAAAGAACGAATCATTGCCGAAACTGGTGCTGGACAGCATGGAGTTGCAACCGCCACTGTATGTGCACGCTTTGGATTGCAATGCATCATCTATATGGGTGCTCAAGATATGGAAAGACAAGCCCTTAATGTATTCAGAATGAAGCTCCTTGGAGCAGAGGTTAGAGCTGTTCATTCAGGGACAGCCACACTGAAGGATGCTACATCTGAGGCCATAAGAGACTGGGTGACCAATGTGGAAACAACTCATTACATCTTGGGCTCAGTTGCTGGACCACACCCTTACCCCATGATGGTAAGGGAGTTCCATGCAGTAATTGGTAAAGAAACGAGAAAGCAAGCATTGGAAAAATGGGGTGGAAGACCAGATGTTTTGGTTGCTTGTGTTGGTGGCGGATCAAATGCTATGGGGCTGTTCCATGAGTTCGTTGATGACAAAGATGTTAGAATGATCGGAGTAGAGGCTGCAGGTTTTGGCCTAGACAGTGGAAAGCATGCAGCTACCTTAACAAAGGGAGAGGTTGGGGTGTTACATGGAGCCATGAGCTATTTGTTACAGGATGATGATGGACAAATCATCGAGCCTCATTCTATTAGTGCAGGGCTGGACTACCCAGGAGTTGGACCTGAGCACAGCTTTCTAAAAGATACTGGGCGTGCTGAATATTATAGCATTACTGATGAGGAAGCATTGGAAGCATTTAAGAGACTGTCTAGATTAGAAGGCATAATCCCAGCTTTGGAGACATCTCATGCACTGGCTTATCTAGAGAAACTGTGCCCAACCCTTCCTAATGGCACAAAGGTTGTCCTTAACTGCAGTGGTAGAGGAGACAAGGATGTTCATACTGCCATCAAGCATCTGCAGGTTTAA	1917	47.05	MGKGQPPLLIGWGLRSRRPLWLIRYKRVGRMYFCRPAKKQLLKRKMLTLSPQIHSSSENGPEFSIANLDKAHMDVDRDLHGDVLIEGLSSLLGPIPLAQQSILGPFPAGPGIASNPRRSLLLHQSPVSLGHQLITGTSSLLGMECPLQVKYTCGSGSGSHHAYQTLPFQIRMAFSSATPLHRITAISSSSSSSSPFFKPYPSQLSLQFNKIASCSPKSFALANHQMGLDKAPVLHDLSILQRPDSLGRFGKYGGKYVPETLMYALSELESAFKALATDHQFQKELDGILKDYVGRESPLYFAQRLTEHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGRPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSITDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g02210	638	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	326	340	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Ccar2g02210	638	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	229	637	IPR023026	GO:0000162(InterPro)\|GO:0000162(PANTHER)\|GO:0004834(InterPro)\|GO:0004834(PANTHER)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)
	Ccar2g02210	638	FunFam	Tryptophan synthase beta chain	450	629	-	-
	Ccar2g02210	638	NCBIfam	tryptophan synthase subunit beta	247	635	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Ccar2g02210	638	CDD	Trp-synth-B	264	631	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Ccar2g02210	638	Gene3D	-	249	451	IPR036052	-
	Ccar2g02210	638	Gene3D	-	294	629	IPR036052	-
	Ccar2g02210	638	Hamap	Tryptophan synthase beta chain [trpB].	242	636	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Ccar2g02210	638	Pfam	Pyridoxal-phosphate dependent enzyme	295	623	IPR001926	-
	Ccar2g02210	638	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	243	635	IPR036052	-
	Ccar2g02210	638	FunFam	Tryptophan synthase beta chain	301	449	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g02210	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	943774	Ccar	Ccar12g00494	Ccar-Chr12:6166908	Ccar2g02210	Ccar-Chr2:69250010