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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g02215	ATGAGACGGAGAGCAGGAATTGGTGGTCTACAGAATGCCGCCGCCGCTAGGGATCAATACCGGTTACTGGGAGAAAATGTGGCCAGGTTAAGAACCGATCTTATGAAGGAACAGCTTTCCACGTTTCGTTCTCAATTAGAAGATTTTGCTCGCAAACATAAGAATGATATTCGCAAGAACCCTGCTTTCAGATCACAGTTTCACGAGATGTGTGCGAAAGTAGGAGTAGACCCACTGGCATCAAATAAAGGTTTTTGGGCTGAGCTCCTAGGAATCGGTGATTTCTATTATGAACTTGGTGTGCAAATTGTTGATGTCTGCTTGGCTACTAGACCCCATAATGGGGGTTTGATTAACTTGGAGGAACTCTGCAAGCTTCTAAGTCAGAGACGAAAGGGTGCTCGTGAGGTAGTGTCTGAAGATGATTGCTTGCGTGCGATTGGTAAATTGAAGGTGTTGGGGAGTGGTTTTGAAGTGATTACTGTTGGGAAAAGAAAGCTTGTTCGCTCTGTCCCAACTGAATTGAAGAAAGATCACAATGAAATTCTAGAGTTGTCTCAGGCTCAAGGTTTTGTGACAGTTGAGGAAGTAGAGAGACGGCTATCATGGTCCAGTGGTCGTGCCACGGATGCCCTTGAAACTCTATTAGATGAGGGACTTGCGATGATCGATGAAGGCCACAGAGATGGCAAACGACGTTATTGGTTCCCTTGTGTGTCTTCTGTCTCTTCCTTTGTGGCATCTGAGACTCTTTGA	756	45.5	MRRRAGIGGLQNAAAARDQYRLLGENVARLRTDLMKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDVCLATRPHNGGLINLEELCKLLSQRRKGAREVVSEDDCLRAIGKLKVLGSGFEVITVGKRKLVRSVPTELKKDHNEILELSQAQGFVTVEEVERRLSWSSGRATDALETLLDEGLAMIDEGHRDGKRRYWFPCVSSVSSFVASETL	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g02215	251	Gene3D	-	91	171	IPR036388	-
	Ccar2g02215	251	SUPERFAMILY	Winged helix DNA-binding domain	175	239	IPR036390	-
	Ccar2g02215	251	Gene3D	-	24	85	-	-
	Ccar2g02215	251	SUPERFAMILY	Winged helix DNA-binding domain	24	174	IPR036390	-
	Ccar2g02215	251	PIRSF	ESCRT2-Vps22	1	245	IPR016689	GO:0000814(InterPro)\|GO:0071985(InterPro)
	Ccar2g02215	251	PANTHER	EAP30 SUBUNIT OF ELL COMPLEX	1	244	IPR016689	GO:0000814(PANTHER)\|GO:0000814(InterPro)\|GO:0043328(PANTHER)\|GO:0071985(InterPro)
	Ccar2g02215	251	Gene3D	-	172	250	IPR036388	-
	Ccar2g02215	251	FunFam	Vacuolar-sorting protein SNF8	91	171	-	-
	Ccar2g02215	251	FunFam	Vacuolar protein sorting-associated protein	172	250	-	-
	Ccar2g02215	251	Pfam	EAP30-Vps36 family	5	225	IPR040608	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g02215	K12188	ESCRT-II complex subunit VPS22

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	948995	Ccar	Ccar1g01047	Ccar-Chr1:12086310	Ccar2g02215	Ccar-Chr2:69283206
	949749	Ccar	Ccar1g02251	Ccar-Chr1:42643910	Ccar2g02215	Ccar-Chr2:69283206