AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02222 ATGGGTTGCAGAAATGGAGGACAATTCCAACCCCAAGAACAAGACAGAAGATCATCGTCAATTGTGAACGATGCCTTGCTCTTAACCACCATGTGCATCATTGGCTTCCCTGTTGATGTTCACATCAAGGATGGTTCCATCTATTCTGGAATCTTCCACACTGCTTCTGTTGATGACCATTATGCTATTGTGTTGAAACGAGCAAGGATGATCAAGAAAGGAAGCTGTGATTCAAATGTGGCGAATGAGGGGGTGATAGGAACACTTAGAGTACTGCTTCCCGCGGATGGTTTTGCTGGCCATGAAACCGGGGATGATACGGAGGCTGTGGCTTGCGCTTTTCCTTCTAACGGAACTCCATTGACAGAAGCAAATAAAACAATCTCTAGCATGTCAAATGTTGATCAGCCACATGCTAATCAAACAAGATGCTCATCCGGGACTGAGAATGGGCTTGCTAATGGCTTTAGGCCCGAGCTTGCTATTCACTCGAGTAATGTTCTGGAAGTCAATAGAAAAGCAGATCTCAGAGGCTCAACAAAGGTGACATTTTTCCGCCAACTTGATGAATTAATGTACACGGGAACTGAATTATGGGCAAAGAAAGAAGAATCTTTGAATGATCAAGATGATAACAGAAAGAACGGATCTAAAGTCCCTGCTAACGGAATACTCCCTGATGGTGCTGCTTCTTCTACTTCCAAGAAACAAGAAACTGTTGACGCTGTTCCTTCTGCTACGATATCTTCAGAACCATCATCAACTCCAAGTGAACCCGTCACTTCAAAAATCTTGAATCCTAATCGAGCCACTAAGGAATTTAAACTTAACCCTGGAGCAAAGATCTTTTCGCCATCATTTCCGAATAAGAGATCGGCTACTCCTCCAGCAATGCCAGCGGGTGCAAATCTTGCATATGTTCCAGACGGTTATCCTGCAGTACCAGTTGCTACTCCGCAGCCAGAAGTTGAAGTCAGCCCATATGCTCATCATCGTCCAGTGCCCGTTAAGTTTGTTCCATATGGTAACTTGATTTCTGGAAATGGAGGCGGCGATGTTCAACATCCTCCACCTATTGTTGGATATGTGGCAAATAGGAGTCAGCCGGTTAGATATGGTGGCCAATATCATCCTGTTCAAACAGCGCCTACCTATGTTCAACCAAGCTCTCAGAATGTAATGGTTGGAAGATTGGGACCGGTTTTCTACGTCCATCCACTTCCTCAAGACATGGTCCCGAGTACAACTGGTTTCTCTCAAGGGTCTACGTGCTCTATCTTAACTCCGCACCAAGTCCACGTCCCTAAACACCAAGGAACCGGAGCGGCCCAAGCATTGCAGCTATGTGCGACGCCTCCATTTATAGCTGCGGGTGGTCAAGCACCGTTTGTGTTGCCGAGCCACATTCCGATTTCGCAACCGCCGTACCCTGTGATCCGTCCAATCTCGGTCCCGGGGTCTAATGGTTTCTTAGTATCAAAGTATTCTTGA 1491 46.14 MGCRNGGQFQPQEQDRRSSSIVNDALLLTTMCIIGFPVDVHIKDGSIYSGIFHTASVDDHYAIVLKRARMIKKGSCDSNVANEGVIGTLRVLLPADGFAGHETGDDTEAVACAFPSNGTPLTEANKTISSMSNVDQPHANQTRCSSGTENGLANGFRPELAIHSSNVLEVNRKADLRGSTKVTFFRQLDELMYTGTELWAKKEESLNDQDDNRKNGSKVPANGILPDGAASSTSKKQETVDAVPSATISSEPSSTPSEPVTSKILNPNRATKEFKLNPGAKIFSPSFPNKRSATPPAMPAGANLAYVPDGYPAVPVATPQPEVEVSPYAHHRPVPVKFVPYGNLISGNGGGDVQHPPPIVGYVANRSQPVRYGGQYHPVQTAPTYVQPSSQNVMVGRLGPVFYVHPLPQDMVPSTTGFSQGSTCSILTPHQVHVPKHQGTGAAQALQLCATPPFIAAGGQAPFVLPSHIPISQPPYPVIRPISVPGSNGFLVSKYS 496
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02222 496 PANTHER ATAXIN 2-RELATED 18 89 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Ccar2g02222 496 Pfam Ataxin 2 SM domain 23 83 IPR025852 -
Ccar2g02222 496 MobiDBLite consensus disorder prediction 204 271 - -
Ccar2g02222 496 MobiDBLite consensus disorder prediction 227 268 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02222 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
951293 Ccar Ccar2g02222 Ccar-Chr2:69320759 Ccar9g00054 Ccar-Chr9:2642582