AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02224 ATGAGGGTTCATATCACTCGTAATTTGAACTTAGCGTTGGGTTACCGCCGGATCGTCGCTCGTTCTTTTGCATCAATTTTGTCATTTCGGGCAGCGGCGGCGGATTATTCTCTAACAAAGATTCGTAGGAAGAATTATCTTTCTGCCTTATTAGGGCGGTTCAATTTATCGACTGTTGCTGTAGTGGGAGATCTATCTAGCGTCAAGACAATGGGTTCGCAAGCGGGAGAGGTGGAGTGGCCGGCCAACAAAGTTAGGGACGCTTTTATAAAGTTTTTTGAAGAGAAGAATCACGTTTATTGGAAATCAAGCCCAGTTGTCCCTGTCAATGATCCCACCCTTCTCTTTGCAAATGCTGGAATGAATCAGTTCAAGCCTATCTTTTTGGGAACTGTTGATCCTAACACTTCATTGAGCAAACTGACTCGTGCCTGCAACACCCAGAAGTGCATTCGAGCTGGTGGGAAGCATAATGATCTCGATGATGTTGGCAAAGACACTTATCACCACACCTTCTTTGAGATGCTTGGTAACTGGTCTTTTGGGGATTATTTTAAAAACGAAGCCATTGGATGGGCATGGGAGCTTCTCACAACTGTCTTTAAGCTACCTACTGATCGAATATATGCTACTTATTTTGGTGGTGATGAGAAATTGGGCCTTCCTGCTGATAATGAAGCTAGAGAGATATGGCTCAAATATCTGCCACCCAAACGAGTATTGCCTTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGACCTTGTGGACCCTGTACTGAAATACACTTTGATAGAATTGGTGGTCGTGATGCTGCAGAGTTGGTTAACAATGATGATCCTACATTGATCGAGATATGGAATGTTGTCTTTATTCAGTTTAACCGAGAAGCTGATGGTTCCTTAAAACCTCTGCCTTCCAAACACGTGGATACTGGAATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTATGATACTGATGTCTTTATGCCTATTTTTGATGCTATCCAACAGGCAACTGGTGCTAGACCGTATTCAGGGAAGGTTGGGCCAGACGATGTGGATGGAATTGACATGGCGTACAGAGTTGTTGCTGACCATATTAGGACACTTTCATTTGCCATCGCCGATGGTTCTTGTCCAGGCAATGAAGGGCGTGAATATGTTTTGCGACGCATTCTTCGCCGAGCAGTACGCTATGGAACAGAAGTACTTAAAGCACAGCAAGGATTTTTTAACGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTCTTTCCTGAGCTAAAGCAACAAGAGGCACACATTAGAGAGATTATAGCAGAAGAGGAAGCAAGTTTCGGGAGGACGTTACTCCATGATGCATTTGTGTTGTGGGACACTTTTGGATTTCCACTGGATCTGACTCAGTTGATGGCAGAAGAAAGAAAGTTAGTGGTTGATGTTGAGGGTTTCAATATTGCTATGAATGAAGCTAGAGAACGATCAAGAAACGCGCAGAATAGGGACCACAAAAGTGTGATCAAAGCCATTTACACGGGGAGTGAGTACGTGGAACATGCTGCTACTGGTGATGATGTTGGTATTATTCTTGAGAGCACAAGTTTTTACGCCGAGCAAGGTGGTCAGATATTTGATACTGGAGTACTTGGAGGCTCCTCTGGATCATTTGAAGTTTGTAATGTTCAAGTTTACGGAGGTTTTGTGATTCATCTTGGTAAAATTACAAACGAATCTGGAAAATTCTGCGTAGGAGATGAAGTAATTTGTAAGGTTGACTATGACAGGCGTCAGCTCATTGCTCCTAACCATACCTGTACACACATGTTAAATTTTGCCCTCCGGGAAGTACTTGGGAACCATGTTGACCAGAAAGGATCTATTGTTCTTCCAGAGAAATTAAGATATGACTTTTCCCATGGGAAGCCTGTAAAGCCGGAAGACCTTCGCAAGATTGAAGCCATCGTGAATGAACAAATTAAAGCTGAACTAGATGTTTCTGCAAAAGAGGCAAGCCTTGCTGATGCAAAGCGTGTAAATGGACTGCGAGCGGTTTTTGTAGAAGATCTCTTGGCTGATCCAGAAAATGAAGAGTGGCTGTCCATATCCGCAGAGCTTTGTGGAGGGACCCATATTACAAATACACGAGAGGCAAAGGCATTTGCACTTTTGTCTGAGGAGGGAATTGCGAAGGGGATTCGAAGAGTAACTGCTGTAACAACAGACTATGCTTTTGAGGCTATGAAAAAGGCATCTGAACTCGAACAGGAAAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCGGCCGCTATTCCAACAGCAAAGAAGGCTGATCTTAAGGCCAAAATCTCCATTCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGATTGCTGAGGAGAACATACGCAAAGCCGTTGAAGCAGCCACTAAAGCCGCAGAAGTTGCCTCTTCTGAGGGGAAGGCCTTCTGCATTTCACATGTTGGTGTGGGATCAGATACTACTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAGAAGGGATTGGCGGTGATGGTTTTTAGCACTGACGAACAATCAAAGAAGGCCTTGGTTTGTGCGGGTGTGCCGGAAAAGGGCGAAAGCAGCAACCGCCTGAAGGTCTTAGAGTGGCTGAAGGCGGCATTGAAGCCACTTGAAGGCAAGGGTGGTGGAGGGAAAGGTGGTCTCGCTCAAGGCCAGGGACCCGATATCAAGCATGTCGATGAAGCAATAGACGTGGCCAAGTCATTTGCAGCTCTCAAACTGAGCTGA 2823 44.35 MRVHITRNLNLALGYRRIVARSFASILSFRAAAADYSLTKIRRKNYLSALLGRFNLSTVAVVGDLSSVKTMGSQAGEVEWPANKVRDAFIKFFEEKNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTVDPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADNEAREIWLKYLPPKRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNVVFIQFNREADGSLKPLPSKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKQQEAHIREIIAEEEASFGRTLLHDAFVLWDTFGFPLDLTQLMAEERKLVVDVEGFNIAMNEARERSRNAQNRDHKSVIKAIYTGSEYVEHAATGDDVGIILESTSFYAEQGGQIFDTGVLGGSSGSFEVCNVQVYGGFVIHLGKITNESGKFCVGDEVICKVDYDRRQLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRYDFSHGKPVKPEDLRKIEAIVNEQIKAELDVSAKEASLADAKRVNGLRAVFVEDLLADPENEEWLSISAELCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAMKKASELEQEKVTSLNGQVESAAIPTAKKADLKAKISILQNQVIKAKKKIAEENIRKAVEAATKAAEVASSEGKAFCISHVGVGSDTTAIREAVVKVMEQKGLAVMVFSTDEQSKKALVCAGVPEKGESSNRLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLS 940
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02224 940 Gene3D - 826 935 - -
Ccar2g02224 940 CDD AlaRS-core 82 328 - -
Ccar2g02224 940 Gene3D - 502 601 - -
Ccar2g02224 940 FunFam Alanine--tRNA ligase 502 600 - -
Ccar2g02224 940 Coils Coil 785 817 - -
Ccar2g02224 940 Gene3D Bira Bifunctional Protein; Domain 2 81 329 IPR045864 -
Ccar2g02224 940 FunFam Alanine--tRNA ligase 827 935 - -
Ccar2g02224 940 SUPERFAMILY ThrRS-AlaRS common domain 601 757 IPR018163 GO:0000166(InterPro)
Ccar2g02224 940 PRINTS Alanyl-tRNA synthetase signature 313 326 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ccar2g02224 940 PRINTS Alanyl-tRNA synthetase signature 394 407 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ccar2g02224 940 PRINTS Alanyl-tRNA synthetase signature 370 386 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ccar2g02224 940 PRINTS Alanyl-tRNA synthetase signature 158 169 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ccar2g02224 940 PRINTS Alanyl-tRNA synthetase signature 286 297 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ccar2g02224 940 NCBIfam alanine--tRNA ligase 84 511 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ccar2g02224 940 FunFam Alanine--tRNA ligase, cytoplasmic 79 329 - -
Ccar2g02224 940 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 80 759 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Ccar2g02224 940 SMART tRNA-SAD-4 691 746 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Ccar2g02224 940 Hamap Alanine--tRNA ligase [alaS]. 80 939 IPR023033 GO:0004813(InterPro)
Ccar2g02224 940 SUPERFAMILY Class II aaRS and biotin synthetases 81 332 IPR045864 -
Ccar2g02224 940 FunFam Alanine--tRNA ligase, cytoplasmic 602 761 - -
Ccar2g02224 940 Coils Coil 491 511 - -
Ccar2g02224 940 Gene3D - 602 762 - -
Ccar2g02224 940 Pfam DHHA1 domain 788 934 IPR003156 GO:0003676(InterPro)
Ccar2g02224 940 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 333 514 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Ccar2g02224 940 SUPERFAMILY Translation proteins 526 601 IPR009000 -
Ccar2g02224 940 PANTHER ALANYL-TRNA SYNTHETASE 71 510 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Ccar2g02224 940 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 694 745 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Ccar2g02224 940 Pfam tRNA synthetases class II (A) 513 605 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Ccar2g02224 940 Pfam tRNA synthetases class II (A) 84 460 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02224 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
945616 Ccar Ccar13g01757 Ccar-Chr13:41341264 Ccar2g02224 Ccar-Chr2:69332145