AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02235 ATGAAGGATCTTATGATATCATCAAGAGACTCTTCACCTGTGAAGGAGAGATCTACTTTGAGCTTATCTGCTATGAAGTCATTAGTAGTAGGGGAGAAAGAAGATACGTTTGCTTCTGAGTTCGGTCGTGATGAGAAAGTAATGTCTCTTATCCATTCACTTACGAATGCAGAAGGACATCTTTCTCAAACAAAGAATGGATCTCGGATGGAGAAGAATACGAACATTACTAATTTTGCCAAAGAAATCCATGGTGCTCCTCCTGAGTGCTTTGTTACCGAGCTTGCTGAAGCCATTGGAAGTTTGAAAACTCTGCGGAAAATGGCATTGTTTTGGTCCAGGGTCGTTGTAGAAGTGAGAAGGCTATGGTGTGAAGGACAACATATTCCCGGCATCCCTCCAGATGAGATTCCCGACTTAAATTCGTGCATGTTGTATCAGCAGTTGCAGGTTATTAATTGTTGTATTTCTAGGAAAAGGCGGCGTGCTATTGCCACCGAGTCATTAGATTCTGTTTTAAAACTAGCGAAACTTGATGGTGACAACAAGTGTGGAGATACTCCTCCGCTAAGCCCTGTTGTCTATGCGAGAATTAGCTCTGGGGAACTTGTGCTTCGATTAGGAGCTGATAAACGAAGAGAGAACTGTACACTTTTAGAAACCGGTGAACCTGTATATACCCCTGTTATGCAGGAAGGGCCTCTACTCACAGAAGATCTTATCAAGGAAACAGAGGAATTCGTGTTACGTACGGGGAGGTCAGCTGCAAATCCAGGGTGCATATTAGAAGATTTCGTTAGATGGCATTCACCCCCTGACTGGACCGAAGCATCAACAGACGATGAAAGTAAAGAATCTGCTGATGGTGACAATTTGTCCTCTAAAGGACAGCTAAGTAATTTGTGGCGAGAACTGTGGGAAACTGCAAAACCAGTACCTGCTGTTAGACAGTCTCCACTATATGATGAGGATTTATCCGTGGAAGGTATTCTGCATAGCTTAGAGAACATATCGCCTTCTGGTTTATTTGAGCAACTGTTTCTTTCTCTTGTGTATGAGACAGTGGCGATGATGGCCTTGAATCCAGATGGGGTTATACGGGTCACCACGAAGCCACAACAGCCTGATGATGATAACGAGAGTTTTGAACAAAAAGGTGGCAGTTTTGGGAAACTTGGCTCCATGTTTGGTGGTGGTGGAATGGATTCAAAAACACCACCAAAGAACCAAGAACCCACAATGTTTTCAAAAAAGCCACCAAAACCTGCAACTCCTCTTGAAAATATTGGACTAACACCCCAGTGA 1305 43.37 MKDLMISSRDSSPVKERSTLSLSAMKSLVVGEKEDTFASEFGRDEKVMSLIHSLTNAEGHLSQTKNGSRMEKNTNITNFAKEIHGAPPECFVTELAEAIGSLKTLRKMALFWSRVVVEVRRLWCEGQHIPGIPPDEIPDLNSCMLYQQLQVINCCISRKRRRAIATESLDSVLKLAKLDGDNKCGDTPPLSPVVYARISSGELVLRLGADKRRENCTLLETGEPVYTPVMQEGPLLTEDLIKETEEFVLRTGRSAANPGCILEDFVRWHSPPDWTEASTDDESKESADGDNLSSKGQLSNLWRELWETAKPVPAVRQSPLYDEDLSVEGILHSLENISPSGLFEQLFLSLVYETVAMMALNPDGVIRVTTKPQQPDDDNESFEQKGGSFGKLGSMFGGGGMDSKTPPKNQEPTMFSKKPPKPATPLENIGLTPQ 434
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02235 434 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 20 369 IPR045700 GO:0005096(PANTHER)|GO:0005096(InterPro)|GO:0043547(InterPro)|GO:0043547(PANTHER)
Ccar2g02235 434 Pfam Rab3 GTPase-activating protein catalytic subunit 255 335 IPR026147 -
Ccar2g02235 434 Pfam Rab3 GTPase-activating protein catalytic subunit 206 254 IPR026147 -
Ccar2g02235 434 MobiDBLite consensus disorder prediction 274 289 - -
Ccar2g02235 434 MobiDBLite consensus disorder prediction 272 295 - -
Ccar2g02235 434 MobiDBLite consensus disorder prediction 370 434 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02235 K18270 Rab3 GTPase-activating protein catalytic subunit
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:69404981 Ccar6g00582 Ccar-Chr6:16589929 wgd