AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02239 ATGCCTGATCATCACCTACATCCGTACTTCAGGTTTCTGGTCGATCACCAGGATCTTCTGCAGTCAAAAGACAACGGACAGGCTGAAAATGATGAGAAAATATCCAATACTGAGAATGCGGCAGGAGCAGGAGCACTGTCTTTGCTTGGTTCTGTATATGGCACTGGTGAGGATGAGGATGGTGGAGCCGAGCATGCATCATCATCTAGAGGTGTATCTGATGTTACCATCCCTCTTGCAGCAGGCAAAACCATGTTACCAGCTGAAAAAGATGAGCCTGTTTCAAAGCATTCACTTTCTTCTAAGGAAGATGCTCCTATTATAAAAAGGAATTCCTTGACAAATGCATTGAAAACTGGACGAACTAGCAGCATGAGAAAAGGTGAGTCCTTGGGTTCACTCTCTGCTGTTCCAGATAAGTTGCGGGCTTCTTCTCTTCCTCCTATTCCCAAGATCGAGAACATGCTCCTGGATCCTCCCTCTGACATGAAACGGTTAGTTGACAAGATAGTAGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGGCAGTACTTATGGAACAAGACCGAGCCCATGGGAGATTCCCGTTCCTAATCCCATCGAACAAATTCCATCCATACTATTTAAAAGTTCTCCAGAAAACCCAGGAGTCGAAATTAACTGGCAAGAGTTTGCACAATGAGAAGGAAGATTTCAGAGGACATGTCTTGAATAAGAAAACGTCTATCTCAAGGGACACTGAAAGTTGTTTGATGGAATCTGATGATATACCACTTGATTCTGAAAGGAAAGAAAAGTTTAAGATGGTAATTAACAAGTCTAAAAGGGAAGGATCAGATTTGCCATCTAAAGCGACACAACCACAACTTGGGGTTCAGGTGGATGCTGCTCAAGCAGCAGCTATTCTGCAGGCTGCTACAAGAGGCATTAAACATCCAAATTTAGGGATCCTCTCAAAGATGTCGCTGAATGGCAACAGTTATGGCCCCAGAAGTGAGGGTGGGCAACCCTCCAATTCATCTCATGCCAATAATGCTGCTAAAGAAGTCGCAAGTGAAGCCGATTCCTCTGAGGCACACTTGACTCAGGAGCAGAAACTGAAGGCCGAGAGATTAAAACGGGCTAAGATGTTCGTGGCAATGCTGAAAAGTGGAGCTGCTCCATCAAAAACCGAATCCTCGCGTGGCTTATCAGCCGAGCCACAAGGATCAGGGGAGTCTTTAGGCGATGACAATCGCTTTGCAGCCAAAGAAAGAGAGAGGAGCATGGTACCTTTGGATTTTGAAACTTCAGACAAAAAAATAAAATCGGAAAAGGAACATTTGGACGAAGAAAGACGAGCAAAGAGGAAATACCGAGCTAGATCTAGCAGAGACGAGGAAGGTGAAGCAGCAGAAGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGATGATAACGGTGAGGGTGATGAGAGGGGAGGAAAACGGTCAAGTAAACACCGTACAAAGAAGCACCGATCTCATAATCATCTGGTTGAAGAAGAGAGTGAAGAAAGATACGGGGATGAGAGAGCTTATAAGCATACAAAGAGAAGGCATCGATCTCATCGTACTTCCCATAAACATGGTGACAGGGACAAACACGATGAAGAAAGGGATCATAAGCACTCAAGGAAGAAGAAGCGTCGATCTTCTAGTTCTGTAGAAGTTGATGAACAAGAAAGTGAACCTGAAAGGGTACATGAATATGCTAGAAAGAAGCATCGTTCACACCATTCTTCACATGATGAAGGGTCTCATGATGAAGGGGAAAGCAGGCTTAAATGTTTTAGGAAAACGCGCTCTTCTCGTGGAGAAGATGAAGGACGGGAGGACAGGCACTCTAGGAGGAAACGTCGGTCTCACAAATCTTCTCATCATAGTAGAGATAAGCATAAGCATAGGAAAAGTCACTCGTCTAGGCATAGGCGGAAGCCTGATGTCTCTTCGGAAGAGGATCGGATGGACCATAATAAGGCCCATAAGCATGTAAAAGGATCAAACTCGGAAAGAGAAGAACTGGAAGAGGGGGAGATTAGCTCAAAGTTATCGGGTCAGTCGAGAGGAGGACCTTTGGTTGATGTTGCTTGTAGAGAACCTTCGGTGGATGTATCCAGTTCTTATCAAGATCGGAGACCACTGACTCAGCCCTCTGAGACAACCGACGTTCCTGATGACCTCAGGGCCAAAATCAGAGCAATGTTATTGTCCACATTGTAA 2259 44.67 MPDHHLHPYFRFLVDHQDLLQSKDNGQAENDEKISNTENAAGAGALSLLGSVYGTGEDEDGGAEHASSSRGVSDVTIPLAAGKTMLPAEKDEPVSKHSLSSKEDAPIIKRNSLTNALKTGRTSSMRKGESLGSLSAVPDKLRASSLPPIPKIENMLLDPPSDMKRLVDKIVEFIIKNGRQFEAVLMEQDRAHGRFPFLIPSNKFHPYYLKVLQKTQESKLTGKSLHNEKEDFRGHVLNKKTSISRDTESCLMESDDIPLDSERKEKFKMVINKSKREGSDLPSKATQPQLGVQVDAAQAAAILQAATRGIKHPNLGILSKMSLNGNSYGPRSEGGQPSNSSHANNAAKEVASEADSSEAHLTQEQKLKAERLKRAKMFVAMLKSGAAPSKTESSRGLSAEPQGSGESLGDDNRFAAKERERSMVPLDFETSDKKIKSEKEHLDEERRAKRKYRARSSRDEEGEAAEDEEEEEEDDDDDDDDDDDDNGEGDERGGKRSSKHRTKKHRSHNHLVEEESEERYGDERAYKHTKRRHRSHRTSHKHGDRDKHDEERDHKHSRKKKRRSSSSVEVDEQESEPERVHEYARKKHRSHHSSHDEGSHDEGESRLKCFRKTRSSRGEDEGREDRHSRRKRRSHKSSHHSRDKHKHRKSHSSRHRRKPDVSSEEDRMDHNKAHKHVKGSNSEREELEEGEISSKLSGQSRGGPLVDVACREPSVDVSSSYQDRRPLTQPSETTDVPDDLRAKIRAMLLSTL 752
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02239 752 MobiDBLite consensus disorder prediction 657 692 - -
Ccar2g02239 752 Pfam Surp module 164 213 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ccar2g02239 752 MobiDBLite consensus disorder prediction 89 104 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 383 738 - -
Ccar2g02239 752 SMART surpneu2 164 217 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ccar2g02239 752 MobiDBLite consensus disorder prediction 411 461 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 508 525 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 326 351 - -
Ccar2g02239 752 ProSiteProfiles SURP motif repeat profile. 166 208 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ccar2g02239 752 MobiDBLite consensus disorder prediction 594 627 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 715 735 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 564 583 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 387 401 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 526 541 - -
Ccar2g02239 752 Coils Coil 435 455 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 51 133 - -
Ccar2g02239 752 Gene3D Surp module 153 221 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Ccar2g02239 752 MobiDBLite consensus disorder prediction 326 362 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 462 488 - -
Ccar2g02239 752 MobiDBLite consensus disorder prediction 105 130 - -
Ccar2g02239 752 FunFam Splicing factor 3A subunit 1 151 221 - -
Ccar2g02239 752 SUPERFAMILY Surp module (SWAP domain) 139 213 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Ccar2g02239 752 MobiDBLite consensus disorder prediction 628 656 - -
Ccar2g02239 752 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 1 737 IPR040397 GO:0000395(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02239 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:69433801 Ccar6g00373 Ccar-Chr6:12750239 dispersed