AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02240 ATGAGCTTTGAGTCTGAGAAGCAAAGGCTGATTGCTGCTCCCTTTGTTCCGCTGCATGTTGCTGATATGATTGTGAGACTTGGATTAGGGAAGAACCCATTGGAATTTTATGGAAAAATTCCCTGGATATCAGTTATCCTCCATCATTTACTTAGGGAACTTCCAACTGAAGTAGTGTGTTCAAATGCTGTGGAAATTCTTCACCTTGTTGAGTGCAGCGACGATTATTCATTTGACCAGTGTTTAAATTACAAGATGCTTGGATTGAAACTTTGTGAGGGAATATCTCAAGTGAAAGATGTTGATCCCGTAATTAATGAAGTAATTCAGGTTGCTACCGAAAGGAAGAGCCTTGATGAGTATTTGAAGATCTTGGATGCTTATATGGATATTATTCTACAACATAAGATGGATCTTTATCTAAATTCCATTCTAAGTGAAATATTTGAGAGATTGTGCAATGAAGTGGTTACCGAAGCGGAATTGGCTAGCCTGCAATCAATTGCTCTGAAGCTGATCACACATTTTGATGATATGAAATATGTTTTTGAGCTGAACTATTTTGTTGACATATTAGATGTCATGCATGGGAGCTCAAGAAGCATTGTGGATATGCACATCCTTACTAATGCCACAAGAAATGATCGCATTGATGATCCTACCACCATAAAACTGCTTTTTGATGTTGCTCAGTCTCTTCACGATAGTGTTAATTTCCCAAGCACGAGACAGGATGATAATCATCAGGGAGAGCGTTTGATTGCTCGTTTTGTTGATAAGGTTGACCATGGTAAGGAGTTGGATCGCCATTTGACTTTCTTGATTGAATGCCGTGGAGCTTTTAATAACATGAATGATCTGAAGGAAATTCTTGTTCATTCGAGCAATCTTTTAGCAGCCAGGGCTTTGAGAGAGAAAACTGATCATATCAACTTTATCAAATCTTGCATTACTTTTAATGAAGTTACAATACCATGTATTCCGTCTTATTCGAGGCAGTTAATCTTATATCTTGAAACAGCAGAGGTTTCTCTTTTTGGAGGTTTGATTTCCTATTCAGATGGACTTGTTGATTCCGCTATCGGCTGCTTACAAAACGTTTACTTGGTAGATGGCTTGCGGAAATCCAATGAAGATGCTGATGGTATTGTTTCCTTGATGCAAAGGTTATGCAGCTTCATGCTCTTGGTTCCAGGAGTTACTTACATACCGAAGAGCATATTATCCTTGCTTGATTCACAATCATGGATGACACCAAAACTAAGGATAAGGGTCCTATGTTCACTTCTTTCTTTATCCGCAACATTTGCTCAAAATGAGCTCCCATATCATGCAATTCATGAAGGGGCTGCACGAGGAAAATTGGCACTTGAAGCTTGCAACTGTATTGCGTCGCTTTTGAAGGTGGATCAAGAAATATCGTCCATATGCTCTAAGTTGGTGGAGACGGCGGTATCATGTCTTGGAGCCAATAACAAATATTTGCAGTCAACGATTAATTTTGTGCATAAACAGTCCCCAATCTCGGTCGGAAGAGAATGA 1542 39.17 MSFESEKQRLIAAPFVPLHVADMIVRLGLGKNPLEFYGKIPWISVILHHLLRELPTEVVCSNAVEILHLVECSDDYSFDQCLNYKMLGLKLCEGISQVKDVDPVINEVIQVATERKSLDEYLKILDAYMDIILQHKMDLYLNSILSEIFERLCNEVVTEAELASLQSIALKLITHFDDMKYVFELNYFVDILDVMHGSSRSIVDMHILTNATRNDRIDDPTTIKLLFDVAQSLHDSVNFPSTRQDDNHQGERLIARFVDKVDHGKELDRHLTFLIECRGAFNNMNDLKEILVHSSNLLAARALREKTDHINFIKSCITFNEVTIPCIPSYSRQLILYLETAEVSLFGGLISYSDGLVDSAIGCLQNVYLVDGLRKSNEDADGIVSLMQRLCSFMLLVPGVTYIPKSILSLLDSQSWMTPKLRIRVLCSLLSLSATFAQNELPYHAIHEGAARGKLALEACNCIASLLKVDQEISSICSKLVETAVSCLGANNKYLQSTINFVHKQSPISVGRE 513
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02240 513 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 34 445 IPR029705 GO:0005768(PANTHER)|GO:0032456(PANTHER)|GO:0032456(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02240 K25731 VPS35 endosomal protein-sorting factor-like
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:69214412 Ccar2g02240 Ccar-Chr2:69440376 dispersed