AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02268 ATGTCTGGAGGCGATCGCAATGATCACGCTGTACCGTTGCGATCGAGTTCTTCGTCTTCAGGAGACGATTTGGAAGGTCAAGTGTCATCTGTAAGAAGTAGTAAAGGCATTAAGGATCTGTGGAACAAGTTGGATCGACGGTTTTCTGGTCGACGTCTTAGTATCAAGCGGCGGTTGCCTAAGGGAAACCGGTCAGATTTCGATTATGCGACCGCTAGCCGTAGTGGAGGCGGTGGCGTCGTTGCTGGTGGTGATGAGACCCTTGGAGATGGTGCTCCTCCCGAATGGGCGCTGCTGCTTATTGGATGTCTTCTTGGCTTGGCTACCGGTCTCTGTGTCGCTGCCTTTAATCGTGGGGTGCATGTAATACATGAATGGTCTTGGGCTGGTACCCCTAACGAAGGTGCTGCTTGGCTACGTTTACAGAGGCTGGGTGACACTTGGCACCGTATACTTCTAATACCTGTCACTGGAGGAGTCATCGTTGGGGTGTTGCATGGTTTACTTGAAATATTACACCAGATAAAACAGTCAAATCCTGGACATGATTTTAACCTGCTTTCTGGAGTCTTTCCAACCGTGAAGGCTATCCAAGCTGCTGTAACCTTAGGTACTGGCTGTTCTTTGGGTCCTGAAGGACCTAGTGTAGATATAGGGAAATCATGTGCCAATGGATTCTCATTAATGATGGAAAATAACAAGGAACGCAGGGTAGCTCTTGTTGCAGCTGGTGCAGCTGCTGGCATATCTTCAGGTTTCAATGCAGCAGTAGCTGGTTGTTTCTTTGCCATTGAGACTGTGTTAAGGCCTCAATGTGCTGAAAACTCCCCTCCTTTCACAACTGCAATGATAATATTGGCATCAGTTATTTCATCAACTGTGTCAAGTGTTATACTTGGAGAAAAGCAGGCTTTCACAGTGCCATCGTATGATTTGAAATCTGCTGCTGGTATTTTGTCTCATTCTAGTTCAATTAACTGTTGCTGTAAAGAACATGCATGTGATATAAAATCTGCAACCGGTATCTTAAGGCATCTCCAGTGGGTGGGTCTTGGACCGGTACATTGCCACATCAGCTTGGAAAAAATCAAACTACCTCTCTACTTGATCTTGGGAATGCTATGTGGTGTGGTTAGTGTGCTATTTACTCGCTTAGTAGCCTGGTTCAACAGCGCATTTGCATATATCGAAGAAACGTTTGGACTTCCTGCTATTGTTTCTCCGGCATTAGGTGGTCTAGGAGCAGGGTTGATAGCTCTAAAATATCCTGGAATTCTTTACTGGGGATTCACTAACATTGACGAAATTTTGCATACCGGGAAGACAGCTTCAGCACCCGGAATCTGGCTATTAGCGCAGTTAGCTGCCGCAAAAGTTGTAGCTACGGCTCTTTGCAAAGGTTCAGGGCTTGTTGGTGGTCTGTATGCACCAAGTTTGATGATAGGTGCTGCAGTTGGTGCCGTTGGAATGGCTGCTACCTTGGCTTCTGTTTGTTCTGTGCCCTTGACTTCAGTTCTGCTTCTGTTTGAGCTGACAAAGGATTATAGAATATTGCTTCCTCTTATGGGAGCTGTTGGATTGGCAATATGGGTGCCATCCGTAGCGAACCAATCTAAGGAGGCTGAGGGATCTGATACAAGGAGTTCATCAAGAGGTTATTCCTTTCTTTCACCAATTGATGACAAAACTGACGATTGGAGACAAAATGGCGAAGATGATTTGGAACTTTGCATAATGGGACCTGGTGATAGCCATGAAGCAATTGATGAGGATATTATTCTCGAGGATTTGAAGGTTTCTCAGGCTATGACAAACAGCTATCCGAAAGTCCTATTATCATCAACTGTTAACGAGGCTGTAAAAAGCATGAACGATGGCCAACAAAGTTGTGTGCTTGTTGTTGATCATGAAGATCACTTAGAAGGGATTCTGACCTATGGTGACGTTAAAAGGGGCATCCTTAGGACCCCTAATGGATCCTCCGACAGTGGGATAAACTATCGTGGAAGAAAGCGTGGACTTCTAACTTGTTATCCCGATACAGATTTGGCAATTGCTAAAAAACTAATGGAGGCCAAAGAAATTAAGCAATTGCCTGTGGTACAGCATGTTGTCGATTTCCAAGAAGAAAGAAAGCGAAGGGTTGTTGCCATTCTCTATTACCATTCGATCTGGAGCTGTCTCAGAGAGGAGCTAAATCGCCGGGGAACATGGAGGACCGAAGACCATATTGAAGAGAAGAGTTGCAATGGGCAGATGTCTGGAGGCGATCACAATGATCACGCTGTGCAGTTGCGATCGAGTTCTTCGTCTTCAGGTGACGATTTGGAAGGCCAAGTTTCATCTGTAAGAAGTAGTAAAGGCATTAAGGATCTGTGGAAAAAGTTGGATCGACGGTTTTCTGGTCGACGTCTTAGTATCAAGCGGCGGTTGCCTAAGGGAAACCGGTCAGATTTCGATTATGCGACCGCTAGCCGTAGTGGAGGCGGTGGCGTCGTTGCTGGTGGTGATGAGACCCTTGGAGATGGTGCTCCTCCCGAATGGGCGCTGCTGCTTATTGGATGTCTTCTTGGCTTGGCTACCGATTGCCTGACAGCAAGGTACTCAATACAGGTGCATGTAATACATGAATGGTCTTGGGCTGGTACCCCTAATGAAGGTGCTGCTTGGCTACGTTTACAGAGGCTGGGTGACACTTGGCATCGGATACTTCTAATACCTGTCACTGGAGGAGTCATCGTTGGGGTGTTGCATGGGTTACTTGAAATATTACACCAGATAAAACAGTCAAATCCTGGACATGATTTTAACCTGCTTTCTGGAGTCTTTCCAACCGTGAAGGCTATCCAAGCTGCTGTAACCTTAGGTACTGGCTGTTCTTTGGGTCCTGAAGGACCTAGTGTAGATATCGGGAAATCATGTGCCAATGGATTCTCATTAATGATGGAAAATAACAAGGAACGCAGGATAGCTCTTGTTGCAGCTGGTGCAGCTGCTGGCATATCTTCAGGTTTCAATGCAGCAGTAGCTGGTTGTTTCTTTGCCATTGAGACTGTGTTAAGGCCTCAATTTGCTGAAAACTCCCCTCCTTTCACAACTGCAATGATAATATTGGCATCAGTCATTTCATCAACTGTATCAAGTGTTATACTTGGAGAAAAGCAGGCTTTCACAGTGCCGGAGTATGATTTGAAATCTGCTGCTGAACTACCTCTCTACTTGATCTTGGGAATGCTATGTGGTGTGGTTAGTGTGCTATTTACTCGCTTAGTAGCTTGGTTCAACAACACATTTGCATATATCGAAGAAAGGTTTGGACTTCCTGCTATTGTTTCTCCAGCATTAGGTGGTCTAGGAGCAGGGTTGATAGCTCTAAAATATCCAGGAATTCTTTACTGGGGCTTCACTAATGTTGACGAAATTTTGCATACCGGGAAGACAGCTTCAGCACCCGGAATCTGGCTATTAGCGCAGTTAGCTGCCGCAAAAGTTGTGGCTACGGCTCTTTGCAAAGGTTCAGGGCTTGTTGGTGGTCTGTATGCACCAAGTTTGATGATAGGTGCTGCAGTTGGTGCCGTTGGAATGGCTGCTACCTTGGCTTCTGTTTGCTCTGTGCCCTTGACTTCAGTTCTGCTTCTGTTTGAGCTGACAAAGGATTATAGAATCTTGCTTCCTCTTATGGGAGCTGTTGGATTGGCAATATGGGTGCCATCCGTAGCGAACCAATCTAAGGAGGCCGAGGGATCTGATACAAGGAGTTCATCAAGAGGTTATTCCTTTCTTTCACCAATTGATGACAAAACTGACGATTGGAGACAAAATGGCGAAGATGATTTGGAACTTTGCATAATGGGACCTGGTTTCTCAGGCTATGTCAAACAGCTATCCGAAAGTCCTATTATCATCAACTGTTAA 3915 45.67 MSGGDRNDHAVPLRSSSSSSGDDLEGQVSSVRSSKGIKDLWNKLDRRFSGRRLSIKRRLPKGNRSDFDYATASRSGGGGVVAGGDETLGDGAPPEWALLLIGCLLGLATGLCVAAFNRGVHVIHEWSWAGTPNEGAAWLRLQRLGDTWHRILLIPVTGGVIVGVLHGLLEILHQIKQSNPGHDFNLLSGVFPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNKERRVALVAAGAAAGISSGFNAAVAGCFFAIETVLRPQCAENSPPFTTAMIILASVISSTVSSVILGEKQAFTVPSYDLKSAAGILSHSSSINCCCKEHACDIKSATGILRHLQWVGLGPVHCHISLEKIKLPLYLILGMLCGVVSVLFTRLVAWFNSAFAYIEETFGLPAIVSPALGGLGAGLIALKYPGILYWGFTNIDEILHTGKTASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQSKEAEGSDTRSSSRGYSFLSPIDDKTDDWRQNGEDDLELCIMGPGDSHEAIDEDIILEDLKVSQAMTNSYPKVLLSSTVNEAVKSMNDGQQSCVLVVDHEDHLEGILTYGDVKRGILRTPNGSSDSGINYRGRKRGLLTCYPDTDLAIAKKLMEAKEIKQLPVVQHVVDFQEERKRRVVAILYYHSIWSCLREELNRRGTWRTEDHIEEKSCNGQMSGGDHNDHAVQLRSSSSSSGDDLEGQVSSVRSSKGIKDLWKKLDRRFSGRRLSIKRRLPKGNRSDFDYATASRSGGGGVVAGGDETLGDGAPPEWALLLIGCLLGLATDCLTARYSIQVHVIHEWSWAGTPNEGAAWLRLQRLGDTWHRILLIPVTGGVIVGVLHGLLEILHQIKQSNPGHDFNLLSGVFPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNKERRIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPQFAENSPPFTTAMIILASVISSTVSSVILGEKQAFTVPEYDLKSAAELPLYLILGMLCGVVSVLFTRLVAWFNNTFAYIEERFGLPAIVSPALGGLGAGLIALKYPGILYWGFTNVDEILHTGKTASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQSKEAEGSDTRSSSRGYSFLSPIDDKTDDWRQNGEDDLELCIMGPGFSGYVKQLSESPIIINC 1304
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02268 1304 ProSiteProfiles CBS domain profile. 603 661 IPR000644 -
Ccar2g02268 1304 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 783 1193 IPR050368 GO:0005794(PANTHER)|GO:0009507(PANTHER)
Ccar2g02268 1304 SUPERFAMILY Clc chloride channel 847 1240 IPR014743 -
Ccar2g02268 1304 MobiDBLite consensus disorder prediction 1 33 - -
Ccar2g02268 1304 Gene3D - 583 728 IPR046342 -
Ccar2g02268 1304 PRINTS Chloride channel signature 501 520 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ccar2g02268 1304 PRINTS Chloride channel signature 246 265 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ccar2g02268 1304 PRINTS Chloride channel signature 483 499 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ccar2g02268 1304 PRINTS Chloride channel signature 195 214 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ccar2g02268 1304 Pfam CBS domain 599 653 IPR000644 -
Ccar2g02268 1304 Pfam Voltage gated chloride channel 1192 1236 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ccar2g02268 1304 Pfam Voltage gated chloride channel 929 1192 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ccar2g02268 1304 Pfam Voltage gated chloride channel 177 531 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ccar2g02268 1304 MobiDBLite consensus disorder prediction 748 783 - -
Ccar2g02268 1304 MobiDBLite consensus disorder prediction 11 33 - -
Ccar2g02268 1304 SUPERFAMILY Clc chloride channel 95 534 IPR014743 -
Ccar2g02268 1304 Gene3D Clc chloride channel 343 545 - -
Ccar2g02268 1304 Gene3D Clc chloride channel 88 320 - -
Ccar2g02268 1304 Gene3D Clc chloride channel 841 1250 - -
Ccar2g02268 1304 SUPERFAMILY CBS-domain pair 594 702 IPR046342 -
Ccar2g02268 1304 SMART cbs-1 673 729 IPR000644 -
Ccar2g02268 1304 SMART cbs-1 606 654 IPR000644 -
Ccar2g02268 1304 CDD Voltage-gated-ClC 872 1233 - -
Ccar2g02268 1304 CDD Voltage-gated-ClC 108 528 - -
Ccar2g02268 1304 MobiDBLite consensus disorder prediction 752 783 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02268 K03281 chloride channel protein, CIC family
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Event-related genes

Select Gene_1 Gene_2 Event_name
38913 Ccar2g02268 Ccar6g00511
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr16:13036 Ccar2g02268 Ccar-Chr2:69709936 transposed
Ccar Ccar-Chr6:15715268 Ccar2g02268 Ccar-Chr2:69709936 transposed
Ccar Ccar-Chr6:15723555 Ccar2g02268 Ccar-Chr2:69709936 transposed
Ccar Ccar-Chr7:4830238 Ccar2g02268 Ccar-Chr2:69709936 transposed
Ccar Ccar-Chr2:69709936 Ccar6g00511 Ccar-Chr6:15713667 wgd