AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02271 ATGTCTTCCTTTGCGACTGCCGAAGTTTGCGACGCACATGCATCCCACCTAGCCGTTGGTGATCTCCGAGCCCTGGAGCCCGTGTTCAAGATTTACGGGCAATGTCGAGCTTTCTCTGGGCCCATAGTCACTCTCAAGGTGTTTGAGGACAACGTTTTGGTTCGGGAGTATCTCGAGACTAGGGGGGACGGTCGGGTCCTAGTCATTGATGGCGGTGGAAGCATGAGATGTGCACTCGTGGGCGGCAATCTTGGCCAGTTGGCTCTGAACAACGGGTGGGCAGGAATTGTCGTCAATGGGTGCATCAGAGACGTGGATGAGATCAACGATTGCGATATTGGGGTTCGAGCATTGGCTTCTCATCCTCAAAAGTCGTATAAAAGAGGTGTCGGTGAAAAGAACGTGCCGGTTCATATCGGAGGAACCATAATCCATGATGGTGAATGGTTGTATGCCGATAGCGATGGGATTCTTGTGTCGAAAACCGAGTTGTCGTTGTGA 501 51.9 MSSFATAEVCDAHASHLAVGDLRALEPVFKIYGQCRAFSGPIVTLKVFEDNVLVREYLETRGDGRVLVIDGGGSMRCALVGGNLGQLALNNGWAGIVVNGCIRDVDEINDCDIGVRALASHPQKSYKRGVGEKNVPVHIGGTIIHDGEWLYADSDGILVSKTELSL 166
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02271 166 NCBIfam RraA family 6 160 IPR010203 GO:0008428(InterPro)|GO:0051252(InterPro)
Ccar2g02271 166 CDD RraA-family 7 160 IPR005493 -
Ccar2g02271 166 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 1 165 - -
Ccar2g02271 166 Pfam Aldolase-RraA 6 159 IPR005493 -
Ccar2g02271 166 Gene3D - 1 166 - -
Ccar2g02271 166 SUPERFAMILY RraA-like 4 164 IPR036704 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02271 K02553 regulator of ribonuclease activity A
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr17:5535419 Ccar2g02271 Ccar-Chr2:69786639 dispersed