AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ccar2g02301 | ATGAAGGATAGCGGTAGCAGTGGCGGTGGCGCCGGAAGAAAACAAGGGGCGGCATCGCCGTGTGCCGCTTGCAAGCTTTTACGAAGAAGATGTTCTCAAGATTGTGTTTTTGCACCCTACTTTCCGGCCGACGAGCCTCAGAAGTTTGCCAGTGTTCATAAGGTGTTTGGTGCTAGCAATGTCAACAAGATGCTCCAGGAATTACCGGAGCATCATAGAGGTGACGCTGTGAGTTCAATGGTGTATGAAGCAAACGCACGGATCAGGGATCCAGTGTACGGTTGTGTCGGAGCAATATCATCCCTACAACAACAAATAGACGTACTTCAAGCACAATTGGCAGTGTCCCAAGCAGAAGTGGTTCACATGAGAATGCGCCAGTTCTCGTCAAGCCCCGTCAACCAGTCACCGGAAAACATCTCGCCACCGTCTCGCCACCACCCATCACACACACCAACCAGGTCCCTTTTTGGCATGGACATGGTAGTTGACCACCAAAGTCATATGGGCATGGGGGAGTCCTTATGGTCCTCGTGCAACTAG | 543 | 51.57 | MKDSGSSGGGAGRKQGAASPCAACKLLRRRCSQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLAVSQAEVVHMRMRQFSSSPVNQSPENISPPSRHHPSHTPTRSLFGMDMVVDHQSHMGMGESLWSSCN | 180 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ccar2g02301 | 180 | Coils | Coil | 99 | 119 | - | - | |
| Ccar2g02301 | 180 | MobiDBLite | consensus disorder prediction | 128 | 155 | - | - | |
| Ccar2g02301 | 180 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 18 | 138 | - | - | |
| Ccar2g02301 | 180 | MobiDBLite | consensus disorder prediction | 128 | 151 | - | - | |
| Ccar2g02301 | 180 | ProSiteProfiles | LOB domain profile. | 19 | 120 | IPR004883 | - | |
| Ccar2g02301 | 180 | Pfam | Lateral organ boundaries (LOB) domain | 20 | 117 | IPR004883 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ccar2g02301 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ccar | Ccar-Chr12:5624801 | Ccar2g02301 | Ccar-Chr2:70136928 | dispersed | |
| Ccar | Ccar-Chr1:2778431 | Ccar2g02301 | Ccar-Chr2:70136928 | dispersed | |
| Ccar | Ccar-Chr1:5354954 | Ccar2g02301 | Ccar-Chr2:70136928 | dispersed | |
| Ccar | Ccar-Chr1:44949282 | Ccar2g02301 | Ccar-Chr2:70136928 | dispersed | |
| Ccar | Ccar-Chr2:70136928 | Ccar5g00301 | Ccar-Chr5:4029158 | dispersed | |
| Ccar | Ccar-Chr2:70136928 | Ccar1g00227 | Ccar-Chr1:2520487 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ccar14g00407 | . | 1 | 112 | AS2 family | AT4G37540 | 67.857 | 5.76e-51 | 162.0 | |
| Ccar11g00746 | . | 3 | 209 | AS2 family | AT4G00210 | 51.174 | 5.51e-60 | 185.0 | |
| Ccar11g00745 | . | 20 | 204 | AS2 family | AT4G00220 | 54.639 | 1.75e-61 | 190.0 | |
| Ccar11g00512 | ACH | 1 | 161 | AS2 family | AT3G03760 | 60.87 | 6.20e-58 | 183.0 | |
| Ccar16g00802 | . | 1 | 87 | AS2 family | AT4G00210 | 65.556 | 3.08e-36 | 122.0 | |
| Ccar16g00803 | . | 37 | 243 | AS2 family | AT2G45420 | 61.611 | 2.50e-69 | 212.0 | |
| Ccar7g00249 | . | 6 | 115 | AS2 family | AT3G26660 | 61.538 | 6.33e-48 | 152.0 | |
| Ccar7g00198 | . | 1 | 110 | AS2 family | AT3G26660 | 40.0 | 4.74e-24 | 88.2 | |
| Ccar7g00200 | . | 1 | 112 | AS2 family | AT3G26660 | 51.181 | 4.27e-43 | 137.0 | |
| Ccar8g01124 | ACH | 35 | 155 | AS2 family | AT3G13850 | 66.942 | 3.01e-52 | 169.0 | |
| Ccar8g00730 | ACH | 1 | 142 | AS2 family | AT3G49940 | 67.606 | 4.58e-66 | 201.0 | |
| Ccar9g00955 | . | 52 | 193 | AS2 family | AT2G30130 | 58.451 | 3.17e-44 | 141.0 | |
| Ccar9g00748 | ACH | 11 | 212 | AS2 family | AT3G58190 | 51.98 | 5.50e-65 | 199.0 | |
| Ccar9g00747 | . | 7 | 245 | AS2 family | AT2G42430 | 56.067 | 8.57e-78 | 231.0 | |
| Ccar12g00676 | . | 50 | 137 | AS2 family | AT3G03760 | 79.545 | 7.71e-49 | 154.0 | |
| Ccar12g00445 | . | 24 | 115 | AS2 family | AT1G06280 | 64.13 | 1.33e-40 | 136.0 | |
| Ccar12g00443 | . | 24 | 115 | AS2 family | AT1G06280 | 61.957 | 7.10e-36 | 125.0 | |
| Ccar4g00894 | ACH | 35 | 268 | AS2 family | AT3G13850 | 38.514 | 3.54e-53 | 175.0 | |
| Ccar4g00653 | . | 1 | 123 | AS2 family | AT5G63090 | 78.862 | 6.42e-68 | 204.0 | |
| Ccar4g00557 | . | 2 | 138 | AS2 family | AT4G37540 | 57.241 | 3.00e-53 | 169.0 | |
| Ccar4g00016 | . | 27 | 328 | AS2 family | AT3G47870 | 39.145 | 1.65e-58 | 188.0 | |
| Ccar6g00851 | . | 27 | 140 | AS2 family | AT3G47870 | 57.391 | 4.60e-42 | 144.0 | |
| Ccar6g00790 | . | 23 | 186 | AS2 family | AT5G63090 | 62.209 | 1.70e-60 | 184.0 | |
| Ccar10g01115 | ACH | 1 | 253 | AS2 family | AT3G03760 | 48.047 | 7.67e-59 | 185.0 | |
| Ccar5g01545 | . | 33 | 143 | AS2 family | AT3G27650 | 81.982 | 2.00e-68 | 201.0 | |
| Ccar5g01367 | . | 1 | 288 | AS2 family | AT5G66870 | 53.094 | 4.76e-87 | 261.0 | |
| Ccar5g01305 | ACH | 1 | 249 | AS2 family | AT5G67420 | 54.297 | 5.69e-80 | 238.0 | |
| Ccar5g00730 | . | 7 | 87 | AS2 family | AT2G42430 | 78.049 | 1.85e-38 | 131.0 | |
| Ccar5g00139 | ACH | 11 | 153 | AS2 family | AT3G58190 | 63.636 | 5.09e-60 | 186.0 | |
| Ccar3g00670 | . | 12 | 105 | AS2 family | AT3G58190 | 68.421 | 5.85e-44 | 141.0 | |
| Ccar3g00304 | . | 1 | 199 | AS2 family | AT1G65620 | 65.254 | 3.09e-79 | 234.0 | |
| Ccar1g01284 | ACH | 1 | 249 | AS2 family | AT5G67420 | 53.488 | 1.18e-79 | 237.0 | |
| Ccar1g01214 | . | 3 | 247 | AS2 family | AT5G66870 | 53.516 | 6.99e-79 | 240.0 | |
| Ccar1g00665 | . | 3 | 199 | AS2 family | AT1G65620 | 64.253 | 8.17e-76 | 225.0 | |
| Ccar1g00248 | ACH | 17 | 117 | AS2 family | AT2G30130 | 86.538 | 6.22e-62 | 188.0 | |
| Ccar2g02301 | . | 4 | 171 | AS2 family | AT1G31320 | 69.591 | 2.41e-70 | 209.0 | |
| Ccar2g01721 | ACH | 1 | 131 | AS2 family | AT5G67420 | 70.229 | 5.55e-63 | 196.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Ccar | LOB | 1.7e-43 | No_clan | TF | LOB |