AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02314 ATGGCGACGAAGAAGAGTGTAAGTAGTTTGAAGGAAGGAGATCTGAAGGGGAAGAGGGTGTTTATTAGGGTTGATCTCAATGTACCGTTGGATGACAGCTTCAAGATCACCGATGACACCCGTATCCGCGCTGCTGTCCCTACGATCAAATACTTGATGTCTAATGGCGCTAGAGTCGTCCTTTCTTCTCATCTGAAACTGGTGGCCGAGATCCCTAATGGGGGCGTTTTACTTCTTGAAAACGTCAGGTTTTATCCAGAGGAAGAGAAGAATGATCCTGAATTCGCAAAGAAGCTTGCATCTCTAGGTGACCTGTATGTCAATGATGCATTTGGCACTGCACATAGGGCACATGCATCTACCGAGGGTGTTGCAAAGCACTTGAAGCCTTCGGTTGCTGGGTTCCTCATGCAAAAGGAACTTGACTACCTTGTTGGAGCTGTATCTAATCCCAAGAAGCCATTTGCTGCAATTGTTGGTGGTTCAAAAGTTTCAAGTAAAATTGGTGTTATTGAGTCATTATTAGAGAAGGTTAACATCCTTGTGCTTGGTGGAGGAATGATATTCACTTTCTATAAAGCCCAAGGGCACAAAGTTGGGTCTTCCCTTGTGGAAGAAGATAAACTTTCCCTTGCAACATCACTTCTTGAAAAGGCCAAGTCTAAAGGGGTTTCTTTGCTGCTTCCTACTGATGTTGTAGTTGCTGACAAGTTTGCTGCAGATGCCAACAGCAAGGTTGTTCCAGCAAATAGTATTCCTGATGGCTGGATGGGACTGGACATTGGACCAGATTCCATCAAGTCATTCAGTGAAACTTTGGATACTACCAAAACCGTCATATGGAACGGACCTATGGGTGCTATCGCGAAGAAATTGGCCGATCTTAGTGGGAAGGGAGTGACAACCATCATTGGAGGTGGCGATTCAGTTGCAGCTGTGGAAAAGGTTGGGCTTGCCGACAAGATGAGCCACATCTCAACAGGTGGTGGTGCTAGTTTGGAGCTTTTGGAGGGTAAATCACTTCCTGGTGTGCTTGCTTTGAATGACGCTTGA 1053 45.68 MATKKSVSSLKEGDLKGKRVFIRVDLNVPLDDSFKITDDTRIRAAVPTIKYLMSNGARVVLSSHLKLVAEIPNGGVLLLENVRFYPEEEKNDPEFAKKLASLGDLYVNDAFGTAHRAHASTEGVAKHLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSSKIGVIESLLEKVNILVLGGGMIFTFYKAQGHKVGSSLVEEDKLSLATSLLEKAKSKGVSLLLPTDVVVADKFAADANSKVVPANSIPDGWMGLDIGPDSIKSFSETLDTTKTVIWNGPMGAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKSLPGVLALNDA 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02314 350 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 Gene3D - 68 145 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 Hamap Phosphoglycerate kinase [pgk]. 9 349 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 CDD Phosphoglycerate-kinase 10 349 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 Gene3D - 1 67 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 PIRSF Pgk 65 350 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 PIRSF Pgk 2 69 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 Pfam Phosphoglycerate kinase 67 339 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 Pfam Phosphoglycerate kinase 11 65 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 FunFam Phosphoglycerate kinase 135 339 - -
Ccar2g02314 350 SUPERFAMILY Phosphoglycerate kinase 8 349 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 Gene3D - 148 348 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 PANTHER PHOSPHOGLYCERATE KINASE 3 66 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0043531(PANTHER)
Ccar2g02314 350 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 PRINTS Phosphoglycerate kinase family signature 302 313 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Ccar2g02314 350 PRINTS Phosphoglycerate kinase family signature 325 342 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02314 K00927 phosphoglycerate kinase [EC:2.7.2.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
37901 Ccar17g00005 Ccar2g02314
38916 Ccar2g02314 Ccar6g00500
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:70309216 Ccar6g00500 Ccar-Chr6:15603988 dispersed
Ccar Ccar-Chr17:32572 Ccar2g02314 Ccar-Chr2:70309216 wgd