AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02320 ATGGATGATCAGGAGCATTGCGGTGGCGATGGTGTTGGTTGTGGTGCTACTGATCAGACTACCGTCGGTGATTCTTACACGGATCAGTATCGATCTCCTTCTGCCGGTAAATTAAATGATTCTCTTTCGTGGAAACTCGATATCAGCAATTTCCGATTACCAGAATCCTCCTCCACCATCGACGATAAAGCTTCCACTCTCCGCCGACTGTTCCTCCTTGCTCCAATCTACGCATCTATCAAAAGCGGATCGTTAGCGGTTATCGCATCAACTCTAGATTCGTTTTTGGATTTATTATCTGGATTTATTTTATGGTTTACTTCAAACGCCATGAGAAACCCGAATCAGTATCACTATCCAATTGGGAAGAATCGAATGCAACCTGTTGGTATAATCGTTTTCGCAACAATAATGGCGACTCTCGGTTTCCAAATATTGCTAGAGTCCGCAAGAGAACTCGTTGTCAAGACTCATCCTAACGACGATCATGATAGTGAAAAATGGGTGATTGGTATCATGGTGTCTGTGACGGTAGTGAAATTTATGCTCATGATGTATTGTCGAAGATTCGAAAACGAAATAGTGAGAGCGTACGCTCAAGATCATTTCTTCGATGTCATCACCAATTCTGTTGGATTAGCTGCAACAATCTTAGCCATACATTACCGTTGGTGGATTGATCCCGTTGGAGCTATAATTAATGTATGGTCGTTAATAGGGAGAACTGCTCCACCAGAATTCTTGGCGAAATTGACATATTTGGTATGGAATCATCATGAAGAAATAAAACACATCGATACAGTGAGAGCCTACACGTTTGGGAATCATTATTTTGTGGAGGTAGATATTGTGTTGCGAGAGGATATGGTGCTCATTGAGGCACATAACATCGGAGAAATGTTGCAAGTAAAGCTGGAGCAATTGGTTGAAGTCGAAAGAGCATTTGTTCATATCGATTTTGAGTTCACACATACACCTGAACATAAAGGAAAAGTTTGA 999 41.44 MDDQEHCGGDGVGCGATDQTTVGDSYTDQYRSPSAGKLNDSLSWKLDISNFRLPESSSTIDDKASTLRRLFLLAPIYASIKSGSLAVIASTLDSFLDLLSGFILWFTSNAMRNPNQYHYPIGKNRMQPVGIIVFATIMATLGFQILLESARELVVKTHPNDDHDSEKWVIGIMVSVTVVKFMLMMYCRRFENEIVRAYAQDHFFDVITNSVGLAATILAIHYRWWIDPVGAIINVWSLIGRTAPPEFLAKLTYLVWNHHEEIKHIDTVRAYTFGNHYFVEVDIVLREDMVLIEAHNIGEMLQVKLEQLVEVERAFVHIDFEFTHTPEHKGKV 332
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02320 332 Gene3D Cation efflux protein transmembrane domain 64 243 IPR027469 -
Ccar2g02320 332 SUPERFAMILY Cation efflux protein transmembrane domain-like 69 235 IPR027469 -
Ccar2g02320 332 Gene3D Cation efflux protein, cytoplasmic domain 244 320 IPR036837 -
Ccar2g02320 332 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 71 329 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Ccar2g02320 332 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 243 319 IPR036837 -
Ccar2g02320 332 Pfam Dimerisation domain of Zinc Transporter 244 319 IPR027470 -
Ccar2g02320 332 FunFam Metal tolerance protein 11 241 321 - -
Ccar2g02320 332 Pfam Cation efflux family 70 235 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02320 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr17:554586 Ccar2g02320 Ccar-Chr2:70388602 dispersed
Ccar Ccar-Chr2:70388602 Ccar3g00690 Ccar-Chr3:8953007 dispersed