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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02322 GGTTTAAGCACATTCAAGGGTAGGGTTTCAGGAGGACGAGACACCAGGAAGAGTGGTGGAGTCAGAAGTCTCAAGGTGTATGCAGAAAACGAGAAGGTTAAGAGTGATAGCAGGGGTCCTGTTGCCGCTGAAACCAAAAGGAAATCTATTCCAGTCAAAGCTGAAACCAGTCATGTTCATGCCAATCATCATAAGGTGGACGTCAACAAGTTGGAGAAGATTAATGGGAAAAACATCAACTCTGTAGGAAGGAAAGTGTTGGCGGATATCAGCAATTCCAATATTCAGAAGAATGAGACCTTTGATAGCTCCAGACCTGGGAAAGGTAAATTGGAAAAGATGGCATGTATACAAAGGGCTTCAGTTGGTACGAGAGTCAGGACTGCAAGTTCATCAGGCAAACCATCAATGGGAACACATGTGGGAAGCCAGAGTGAAGCTGTTGATGGCCGAAATACACTGAGACGAGTAGTCGGTGCCAAGGATCTGAAGGTCTTCAATGGCAATCCTAGGACAAGGCTACAGGGTCAAGAAACTGTTGGTGATGCTACAAGGAAATCTGCTAGGATTTATAACCCGCCACAAAGGAAATCTTTACCAGTTCTAAAGCACGTCGACAAGGCGGATACATGTGATCTCAACAAAGGAAGTTTGGAAAATAAAGTGAAGAGCAAAGAAAAATGTGGCTTTTCTGTTAAACCTAAAGTGGGCACGAAAGTTGTACCGCAAGTAAGCAATGCCAGGGACTACCGTTGGAAGAATAGGGTTAGCGATGGATATATAAAAATGGTGTCAGAAGGTCATCAGCCAACAGGGGATGCACATAGATTGTCTAGGAGATCAATGAAGCCAACTGTGAAAACTACAATTGGTATTCCCCGAGCTCAAAGGGTATCAAAAAGCACCTCTGTTTCTAGCAAATCAACATTCGCAGCTTCTGTTTCATCTAGGAGGAAGGAGGTGGCATCAAGGTCGTCGTTTTCTAAACATACTGAAGCTGTAACTTGTGAGAAACCTGCAGAAGGTGTTCCATCTGCTTGCAACAGCAACTTAGACGCGAGTACATCAAACGTCGCTGCCAAAAGGAAATCTGGTCGTCGAAAATCCTACACATCTTTGCTAATCGCGAGATCAACGCTGTTAAAGGAAAATGACAATGTCACCAAGCAGGAGATCCTACCCAATATCTATGATGAATGCAATCACCTTGAAGTTGCTGAATATATTGATGAGATCTATCAGCATTATTGGGTTACAGAAGCGCATAATCAGCCGCTAAAAAACTATATGGAGATCCAGACAGAAATCACAGCTCAAATGCGAGGCATATTGATCAATTGGCTCATAGAAGTACATTTGAAATTTGATTTGATGCAAGAGACACTTTATTTGATGGTCACCCTCTTGGACTGTTACTTGTCTGTTGTTACTATTAAGAAAAATGAAATGCAATTAGTTGGTCTCACCGCACTATTGCTAGCATCAAAGTATGAGGATTTCTGGCATCCAAAGGTTATGGAATTAATTAGCATCTCAGCAGAGTTTGAGAACCTAGCATTCTTCCTGATTGAGTTGTGCTTGGTGGAGTATGATGCTTTACATTTCAAGCCATCATTGCTATGTGCATCAGCTATTTATGTTGCTAGGTGTACCCTGCACTTGACCCCACCATGGACTCCACTTCTATGCAAGCATTCTCACTATCACGAGTTTCAGATCAGGGATTGCGCGGAGATGATCTTGAGATTTCATCAAGCTGCAAGAACAGCAGTGCTGAAAGTAACGTATGACAAATACATGGGGGCCGATAACTGCAGAGTTGCAACTATTAGACCTCTCGACAAGCTTCCAACTCAATAG 1860 42.9 GLSTFKGRVSGGRDTRKSGGVRSLKVYAENEKVKSDSRGPVAAETKRKSIPVKAETSHVHANHHKVDVNKLEKINGKNINSVGRKVLADISNSNIQKNETFDSSRPGKGKLEKMACIQRASVGTRVRTASSSGKPSMGTHVGSQSEAVDGRNTLRRVVGAKDLKVFNGNPRTRLQGQETVGDATRKSARIYNPPQRKSLPVLKHVDKADTCDLNKGSLENKVKSKEKCGFSVKPKVGTKVVPQVSNARDYRWKNRVSDGYIKMVSEGHQPTGDAHRLSRRSMKPTVKTTIGIPRAQRVSKSTSVSSKSTFAASVSSRRKEVASRSSFSKHTEAVTCEKPAEGVPSACNSNLDASTSNVAAKRKSGRRKSYTSLLIARSTLLKENDNVTKQEILPNIYDECNHLEVAEYIDEIYQHYWVTEAHNQPLKNYMEIQTEITAQMRGILINWLIEVHLKFDLMQETLYLMVTLLDCYLSVVTIKKNEMQLVGLTALLLASKYEDFWHPKVMELISISAEFENLAFFLIELCLVEYDALHFKPSLLCASAIYVARCTLHLTPPWTPLLCKHSHYHEFQIRDCAEMILRFHQAARTAVLKVTYDKYMGADNCRVATIRPLDKLPTQ 619
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02322 619 PANTHER CYCLINS 515 599 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Ccar2g02322 619 SMART cyclin-7 513 582 IPR013763 -
Ccar2g02322 619 SMART cyclin-7 446 512 IPR013763 -
Ccar2g02322 619 MobiDBLite consensus disorder prediction 338 363 - -
Ccar2g02322 619 MobiDBLite consensus disorder prediction 123 148 - -
Ccar2g02322 619 FunFam Cyclin N-terminal domain containing 2 426 529 - -
Ccar2g02322 619 Gene3D - 411 424 - -
Ccar2g02322 619 Gene3D - 513 609 - -
Ccar2g02322 619 SMART Cyclin-C-2 485 613 IPR004367 -
Ccar2g02322 619 MobiDBLite consensus disorder prediction 122 148 - -
Ccar2g02322 619 SUPERFAMILY Cyclin-like 401 512 IPR036915 -
Ccar2g02322 619 SUPERFAMILY Cyclin-like 509 616 IPR036915 -
Ccar2g02322 619 Gene3D - 425 512 - -
Ccar2g02322 619 MobiDBLite consensus disorder prediction 1 23 - -
Ccar2g02322 619 Pfam Cyclin, N-terminal domain 411 516 IPR006671 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02322 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
38917 Ccar2g02322 Ccar6g00460
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:70395922 Ccar5g00611 Ccar-Chr5:8865278 dispersed
Ccar Ccar-Chr2:70395922 Ccar5g01009 Ccar-Chr5:27531215 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar11g01202 . 4 294 Core Cell Cycle gene family AT3G48750 38.305 9.30e-68 220.0
Ccar11g01115 . 1 418 Core Cell Cycle gene family AT5G25380 46.64 1.44e-140 410.0
Ccar11g01093 . 23 308 Core Cell Cycle gene family AT1G76540 25.24 8.04e-27 105.0
Ccar11g00322 ACH 1 80 Core Cell Cycle gene family AT2G27970 88.75 5.26e-52 155.0
Ccar11g00088 . 1 220 Core Cell Cycle gene family AT5G48820 43.933 2.08e-46 154.0
Ccar16g00870 . 1 294 Core Cell Cycle gene family AT3G48750 84.354 0.0 528.0
Ccar16g00623 . 54 106 Core Cell Cycle gene family AT3G48750 71.698 1.55e-21 82.4
Ccar16g00577 . 18 363 Core Cell Cycle gene family AT5G10270 50.862 2.45e-115 350.0
Ccar16g00485 . 1 288 Core Cell Cycle gene family AT3G48750 36.334 1.06e-64 209.0
Ccar16g00467 . 30 434 Core Cell Cycle gene family AT5G06150 54.699 2.53e-150 432.0
Ccar16g00365 ACH 76 244 Core Cell Cycle gene family AT5G27620 24.211 4.10e-06 47.0
Ccar16g00010 . 2 357 Core Cell Cycle gene family AT4G28980 25.205 9.20e-18 85.5
Ccar7g00687 . 20 391 Core Cell Cycle gene family AT5G10270 35.809 1.63e-65 220.0
Ccar7g00422 ACH 12 304 Core Cell Cycle gene family AT1G76540 26.403 1.58e-29 115.0
Ccar7g00390 ACH 1 367 Core Cell Cycle gene family AT5G67260 44.935 4.31e-99 296.0
Ccar7g00344 ACH 83 195 Core Cell Cycle gene family AT1G49620 40.517 1.69e-17 75.9
Ccar7g00207 . 35 323 Core Cell Cycle gene family AT5G10270 32.18 3.28e-39 145.0
Ccar8g00784 ACH 91 186 Core Cell Cycle gene family AT1G49620 37.864 1.15e-13 65.1
Ccar8g00763 . 14 298 Core Cell Cycle gene family AT4G34160 48.495 7.17e-90 271.0
Ccar8g00721 ACH 64 282 Core Cell Cycle gene family AT1G70210 43.534 8.60e-55 179.0
Ccar15g00949 . 1 435 Core Cell Cycle gene family AT5G25380 46.443 1.91e-138 404.0
Ccar15g00828 . 17 372 Core Cell Cycle gene family AT5G10270 45.205 1.26e-93 301.0
Ccar15g00773 . 1 1009 Core Cell Cycle gene family AT3G12280 61.111 0.0 1173.0
Ccar15g00642 . 18 347 Core Cell Cycle gene family AT5G10270 45.428 3.44e-89 284.0
Ccar12g01281 . 1 299 Core Cell Cycle gene family AT4G03270 43.366 1.08e-72 224.0
Ccar12g01257 . 1 268 Core Cell Cycle gene family AT3G48750 37.638 7.43e-56 180.0
Ccar12g01229 . 18 358 Core Cell Cycle gene family AT5G10270 50.733 3.86e-114 352.0
Ccar12g01164 . 90 132 Core Cell Cycle gene family AT1G73690 57.447 9.22e-11 54.3
Ccar12g01038 . 83 124 Core Cell Cycle gene family AT1G66750 69.048 2.78e-13 64.7
Ccar12g00646 . 58 294 Core Cell Cycle gene family AT3G48750 64.286 8.33e-137 387.0
Ccar12g00420 . 204 361 Core Cell Cycle gene family AT5G11300 32.597 4.55e-19 88.2
Ccar12g00099 . 12 260 Core Cell Cycle gene family AT1G70210 58.175 1.39e-94 280.0
Ccar4g00663 ACH 3 199 Core Cell Cycle gene family AT3G48750 31.0 1.14e-13 68.2
Ccar4g00596 . 18 363 Core Cell Cycle gene family AT5G10270 45.161 1.28e-95 301.0
Ccar4g00545 ACH 1 353 Core Cell Cycle gene family AT5G43080 58.981 4.98e-151 428.0
Ccar4g00337 . 18 357 Core Cell Cycle gene family AT5G10270 48.406 1.63e-105 328.0
Ccar4g00002 ACH 42 302 Core Cell Cycle gene family AT5G65420 44.444 2.14e-68 215.0
Ccar6g00717 . 18 379 Core Cell Cycle gene family AT5G64960 43.902 8.06e-90 302.0
Ccar6g00491 . 18 323 Core Cell Cycle gene family AT5G10270 42.718 5.02e-75 246.0
Ccar6g00284 . 82 202 Core Cell Cycle gene family AT4G37630 46.774 1.36e-29 108.0
Ccar6g00180 . 1 439 Core Cell Cycle gene family AT1G44110 59.737 0.0 520.0
Ccar6g00161 . 26 368 Core Cell Cycle gene family AT5G10270 41.761 4.18e-79 255.0
Ccar6g00050 . 42 303 Core Cell Cycle gene family AT5G65420 48.519 3.78e-78 239.0
Ccar10g01133 ACH 14 304 Core Cell Cycle gene family AT1G76540 26.1 3.41e-28 111.0
Ccar10g00991 ACH 1 82 Core Cell Cycle gene family AT2G27960 95.122 2.23e-56 167.0
Ccar10g00096 . 58 300 Core Cell Cycle gene family AT4G03270 42.449 1.08e-56 182.0
Ccar17g01141 . 1 478 Core Cell Cycle gene family AT4G28980 57.732 0.0 544.0
Ccar17g00818 . 223 365 Core Cell Cycle gene family AT1G76310 23.926 3.99e-06 46.6
Ccar17g00675 . 201 241 Core Cell Cycle gene family AT1G80370 58.537 9.67e-09 54.3
Ccar5g01447 . 32 364 Core Cell Cycle gene family AT5G10270 38.527 9.11e-80 254.0
Ccar5g01345 ACH 150 195 Core Cell Cycle gene family AT1G49620 67.391 9.11e-18 76.3
Ccar5g01319 ACH 10 367 Core Cell Cycle gene family AT5G67260 45.706 3.06e-102 304.0
Ccar5g01009 . 14 429 Core Cell Cycle gene family AT1G20610 54.524 5.61e-152 435.0
Ccar5g00970 . 18 366 Core Cell Cycle gene family AT5G10270 51.705 5.28e-118 360.0
Ccar5g00785 . 2 309 Core Cell Cycle gene family AT3G54180 82.792 0.0 531.0
Ccar5g00635 . 4 211 Core Cell Cycle gene family AT5G02110 32.11 2.11e-26 103.0
Ccar5g00634 . 4 237 Core Cell Cycle gene family AT5G02110 27.778 3.79e-24 100.0
Ccar5g00611 . 1 437 Core Cell Cycle gene family AT5G06150 54.585 3.60e-153 440.0
Ccar5g00494 . 1 287 Core Cell Cycle gene family AT3G48750 36.86 1.36e-59 192.0
Ccar5g00475 . 1 287 Core Cell Cycle gene family AT3G48750 36.082 3.65e-58 189.0
Ccar5g00477 . 5 294 Core Cell Cycle gene family AT3G48750 37.543 3.35e-56 190.0
Ccar5g00476 . 1 294 Core Cell Cycle gene family AT3G48750 37.919 5.06e-62 197.0
Ccar5g00204 ACH 1 221 Core Cell Cycle gene family AT5G48820 40.8 7.75e-43 143.0
Ccar13g01399 . 5 397 Core Cell Cycle gene family AT1G73690 73.869 0.0 573.0
Ccar13g00642 . 11 277 Core Cell Cycle gene family AT1G20930 87.64 5.65e-177 502.0
Ccar13g00433 . 20 290 Core Cell Cycle gene family AT1G66750 30.696 1.12e-28 116.0
Ccar13g00056 . 17 371 Core Cell Cycle gene family AT5G64960 45.055 1.30e-95 305.0
Ccar3g01632 . 19 459 Core Cell Cycle gene family AT1G80370 48.697 2.80e-140 410.0
Ccar3g01488 . 18 323 Core Cell Cycle gene family AT5G10270 50.755 2.23e-102 315.0
Ccar3g01418 . 3 289 Core Cell Cycle gene family AT3G48750 46.128 5.16e-87 271.0
Ccar3g01352 ACH 19 304 Core Cell Cycle gene family AT1G76540 24.079 4.32e-23 97.4
Ccar3g00911 ACH 1 353 Core Cell Cycle gene family AT5G43080 57.027 1.44e-142 407.0
Ccar3g00897 ACH 18 277 Core Cell Cycle gene family AT4G34160 50.183 1.28e-85 261.0
Ccar3g00866 ACH 42 303 Core Cell Cycle gene family AT5G65420 49.817 1.54e-75 233.0
Ccar3g00276 . 1 505 Core Cell Cycle gene family AT5G10270 74.615 0.0 737.0
Ccar1g02521 . 1 430 Core Cell Cycle gene family AT1G76310 60.592 3.26e-178 503.0
Ccar1g01954 . 3 314 Core Cell Cycle gene family AT5G43080 46.921 4.62e-91 276.0
Ccar1g01493 . 146 429 Core Cell Cycle gene family AT1G20610 63.028 5.91e-133 384.0
Ccar1g01307 . 7 318 Core Cell Cycle gene family AT4G37630 34.139 7.43e-48 161.0
Ccar1g01312 . 62 306 Core Cell Cycle gene family AT1G20930 32.046 1.24e-36 133.0
Ccar1g01278 ACH 2 222 Core Cell Cycle gene family AT3G48750 34.956 2.06e-37 135.0
Ccar1g01168 . 115 195 Core Cell Cycle gene family AT1G49620 45.349 1.03e-16 73.6
Ccar1g01131 . 26 357 Core Cell Cycle gene family AT5G10270 46.988 1.36e-105 328.0
Ccar2g02322 ACH 21 647 Core Cell Cycle gene family AT1G16330 40.303 1.88e-132 400.0
Ccar2g02100 . 18 231 Core Cell Cycle gene family AT5G10270 55.349 1.26e-74 244.0
Ccar2g01773 ACH 93 195 Core Cell Cycle gene family AT1G49620 44.643 4.87e-22 87.0
Ccar2g01756 . 14 269 Core Cell Cycle gene family AT4G34160 57.09 6.46e-98 295.0
Ccar2g01710 ACH 44 298 Core Cell Cycle gene family AT1G70210 40.226 7.84e-61 196.0
Ccar2g01586 . 183 242 Core Cell Cycle gene family AT1G80370 53.333 1.24e-13 66.2
Ccar2g00741 . 1 317 Core Cell Cycle gene family AT5G27620 52.665 3.23e-106 310.0
Ccar2g00276 . 1 264 Core Cell Cycle gene family AT3G48750 39.194 6.06e-59 191.0
Ccar2g00274 ACH 99 187 Core Cell Cycle gene family AT5G27620 32.323 2.66e-10 57.0
Ccar2g00246 ACH 1 222 Core Cell Cycle gene family AT5G48820 45.868 7.80e-48 155.0
Ccar2g00081 . 28 498 Core Cell Cycle gene family AT1G02970 58.776 0.0 551.0