Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar5g01566	ATGATTGCACAAGAATCCACACTCACTCTTAAACCATCCTCACGTCGATCCCGAACTAAACTCCGTAAACCCAGATTCCTCCGTCTCCACCTCATCTCCGCCGCACCACCACCAATGCCCACCACCACCAACCACCACAAACAACTCATCAATCTTTTCCCACTTCACCCTGAAAACCTAGTGGATGATCAACAAGACAAACTAGACGAAGAGCATAACATGGCTTGCATATTCTCCTCTTGCGATGACGACGGAGCTGCCACCACCCTCACCGGAATTCTCCGCTCCGACGAAGAGGAAGAATACACCAACAACCCATCTCCGTCGTCGGTTAACTACGCAGACGAGGAGGTGGAGCTTGTACGGACGGCGATGAGGAGGAATAAAACGGAAAGGGACGATGATGATTTGAAATGGGTTTGTTATTCGGAGGTTGTCAAGGAGAAGAAGAAGGTGATGATTAGAGGGTTGTCAGCATCATCATCATCATCAACATCATCATACCATCATCGTCATCATGATCATGATCATCGGAATAAATTGGTTTTGAAACTTGATTATGAAAAGATTATGAATTCATGGGTGAATAAGGGCCCACTTTATATCCATAACAATAATCCGGATATCCAAACCTGTGAACGAGAAAATGGCGGCAATGAAGGGTCGTGGACAGTTCCTGAAATACCAGGTACTGAGAATAATGACACTGATGGAGGAGATGACACAATGCAGGCAATCGGGTCGAACGAAATGATTCATCGTAGAGAAGCAAGTGTTCAAAGGTACAAGGAGAAAAGACGTAACCGCTTATTTGCGAAAACCATTCGTTATGAAGTAAGAAAGCTCAATGCCGAAAAACGCCCTCGTATTAAGGGAAGGTTTGTGAAAAGCAATTGA	897	45.04	MIAQESTLTLKPSSRRSRTKLRKPRFLRLHLISAAPPPMPTTTNHHKQLINLFPLHPENLVDDQQDKLDEEHNMACIFSSCDDDGAATTLTGILRSDEEEEYTNNPSPSSVNYADEEVELVRTAMRRNKTERDDDDLKWVCYSEVVKEKKKVMIRGLSASSSSSTSSYHHRHHDHDHRNKLVLKLDYEKIMNSWVNKGPLYIHNNNPDIQTCERENGGNEGSWTVPEIPGTENNDTDGGDDTMQAIGSNEMIHRREASVQRYKEKRRNRLFAKTIRYEVRKLNAEKRPRIKGRFVKSN	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar5g01566	298	Pfam	CCT motif	255	297	IPR010402	GO:0005515(InterPro)
	Ccar5g01566	298	ProSiteProfiles	CCT domain profile.	255	297	IPR010402	GO:0005515(InterPro)
	Ccar5g01566	298	PANTHER	CCT MOTIF FAMILY PROTEIN, EXPRESSED	10	297	IPR052453	GO:0005634(PANTHER)\|GO:0006355(PANTHER)
	Ccar5g01566	298	MobiDBLite	consensus disorder prediction	215	239	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar5g01566	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr15:5790342	Ccar5g01566	Ccar-Chr5:36794666	dispersed
	Ccar	Ccar-Chr5:36794666	Ccar9g00954	Ccar-Chr9:17691132	dispersed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ccar14g00471	.	3	403	COL gene family	AT1G25440	44.743	3.48e-95	290.0
	Ccar9g00954	.	285	403	COL gene family	AT1G25440	41.803	9.34e-19	82.0
	Ccar15g00216	.	3	403	COL gene family	AT1G25440	45.982	2.59e-104	315.0
	Ccar12g01273	.	1	357	COL gene family	AT3G21880	41.093	1.60e-86	266.0
	Ccar17g00970	.	277	387	COL gene family	AT1G73870	45.946	2.37e-20	90.5
	Ccar5g01566	.	258	386	COL gene family	AT1G73870	41.606	1.97e-22	94.4
	Ccar13g00472	.	3	403	COL gene family	AT1G25440	43.409	6.46e-94	287.0
	Ccar2g02302	.	342	426	COL gene family	AT1G28050	40.23	1.71e-09	55.8

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Ccar	CCT	2.7e-19	CL0281		TR	Others