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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar5g01575 ATGGGTTCGGGTTCGGGTCAATGGTCTGTTGAAAATAGAGCTCCAGTTAGGAATGATTCAGTTGTGAGTGAGTATGTGCCGGAAACTGGTTGTCTTTCGATTATTGTTCTTGGGGCTTCTGGTGATCTTGCGAAGAAGAAAACATTTCCTGCACTCTTTCATCTCTACCGTCAGGGATTTATTCAATCACAGGATGTTCATATTTTCGGTTATGCCCGAACCAAGATTTCAGATGATGATCTGAGAGCTCGCATTTCTGGATATCTTACACCATGCAAAGGTTGTGAGAGAACACACGATGAAGACGTAACCCAGTTTCTGCAATTGATCAAATACGTATCTGGTGCTTATGATACCGAGGAGGGATTTCGATCATTGGACAAGGCGATATCCGAGTACGAACTGTCGAAAAACAGTACAGAAGGATCATCGAGGAGACTCTTCTACCTCGCTCTTCCACCATCTGTATATCCATCTGTCTGCAAAATGATAAAGAGTTATTGCATGAATAAATCTGATCTTGGTGGTTGGACTCGAATTGTTGTGGAGAAGCCTTTTGGTAGGGACTTGGATTCTGCTGAAGAACTCAGTGCTCAGATCGGAGAGCTGTTTGATGAACCACAGATCTATCGTATTGATCATTATTTGGGGAAAGAGTTGGTGCAGAACTTGATTGTGTTTAGAGAGGATTTTGGAACCGATGGTCGTGGTGGATATTTCGATCAATACGGTGAAGTTGTGCTTGGACAATATGAAGGCTATACCGACGATCCAACAGTTCCTGACAACTCTAATACACCCACCTTCGCAACTATGGTTCTCAGGATTCACAATGAAAGATGGGAAGGGAAGGCATTGAATTCAAGAAAGGCGGAAATTCGGGTGCAATTCAAGGATGTTCCCGGTGATATATACAAATGTAAAAAGCAAGGAAGAAATGAGTTTGTGATTAGACTGCAACCTTCAGAGGCCATGTACATGAAGCTAACAGTCAAGCAACCTGGGCTTGAGATGACAACGGTTCAGAGCGAATTAGACTTGTCGTATGGGCAACGAATACGGGGCGATCAACAACATTTCGTTCGTAGAGATGAACTGAAGGCGGCTTGGCAGATTTTCACACCTCTCTTGCACAAAATCGATAGAGGTGAAGTCAAATCACTTCCATACAAACCTGGCAGCCGAGGCCCGACACAGGCCGATCAGTTGGCTGAAAAAGCCGGTTACGTTCAAACTCATGGCTACATATGGATTCCTCCAACTTTGTAG 1269 43.97 MGSGSGQWSVENRAPVRNDSVVSEYVPETGCLSIIVLGASGDLAKKKTFPALFHLYRQGFIQSQDVHIFGYARTKISDDDLRARISGYLTPCKGCERTHDEDVTQFLQLIKYVSGAYDTEEGFRSLDKAISEYELSKNSTEGSSRRLFYLALPPSVYPSVCKMIKSYCMNKSDLGGWTRIVVEKPFGRDLDSAEELSAQIGELFDEPQIYRIDHYLGKELVQNLIVFREDFGTDGRGGYFDQYGEVVLGQYEGYTDDPTVPDNSNTPTFATMVLRIHNERWEGKALNSRKAEIRVQFKDVPGDIYKCKKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMTTVQSELDLSYGQRIRGDQQHFVRRDELKAAWQIFTPLLHKIDRGEVKSLPYKPGSRGPTQADQLAEKAGYVQTHGYIWIPPTL 422
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar5g01575 422 PIRSF G6PD 17 229 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 PIRSF G6PD 225 247 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 PIRSF G6PD 245 414 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 31 419 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 35 223 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 213 219 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Ccar5g01575 422 Gene3D - 27 231 - -
Ccar5g01575 422 Gene3D Dihydrodipicolinate Reductase; domain 2 245 422 - -
Ccar5g01575 422 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 246 409 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 213 415 - -
Ccar5g01575 422 PRINTS Glucose-6-phosphate dehydrogenase signature 179 192 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 PRINTS Glucose-6-phosphate dehydrogenase signature 203 231 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar5g01575 422 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 226 IPR036291 -
Ccar5g01575 422 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 29 228 IPR001282 GO:0004345(PANTHER)|GO:0005829(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar5g01575 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Event-related genes

Select Gene_1 Gene_2 Event_name
39603 Ccar5g01575 Ccar7g00040
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr12:56186 Ccar5g01575 Ccar-Chr5:36872529 dispersed
Ccar Ccar-Chr2:65849468 Ccar5g01575 Ccar-Chr5:36872529 transposed
Ccar Ccar-Chr5:36872529 Ccar7g00040 Ccar-Chr7:262759 wgd