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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar5g01587 ATGGTGCGCACGGACGGAGGGGGAGGAGATCAAGAGGCTGACGACGAGATGTCCCCTCGGGTGCCTACCAATTATAGCAAGCAACATGATCAACATCCTGAAATCTTATTGAGTAGTGTGAAAAGCAATAACGTTAAACCAACAGCTCCTCCATTGCCATTGGTTTCTCCATCATCTAGTAATAACTGTATAGGTATATTCAGCCACTCCATACCTATCAAGTGTGTGGTTACAGGTATCCTTGGTTGTAGTCCAATCATGTCCAACAAGATTTGCATACAAGATTCCTCAGTCACAATGTTGCAACACTCAGGGAAAATGGGTTGGCGGATTAAAAGACTCAATGATACTTCTCATCTTAGGCTTGTGTAG 372 43.82 MVRTDGGGGDQEADDEMSPRVPTNYSKQHDQHPEILLSSVKSNNVKPTAPPLPLVSPSSSNNCIGIFSHSIPIKCVVTGILGCSPIMSNKICIQDSSVTMLQHSGKMGWRIKRLNDTSHLRLV 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar5g01587 123 MobiDBLite consensus disorder prediction 21 36 - -
Ccar5g01587 123 SUPERFAMILY Phosphoglycerate mutase-like 59 121 IPR029033 -
Ccar5g01587 123 MobiDBLite consensus disorder prediction 1 36 - -
Ccar5g01587 123 Gene3D - 9 122 IPR029033 -
Ccar5g01587 123 PANTHER PUTATIVE-RELATED 8 123 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar5g01587 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
38307 Ccar1g00931 Ccar5g01587
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr1:11252815 Ccar5g01587 Ccar-Chr5:36977636 wgd