AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar5g01589 ATGAATCCACAACCTCCTCCTTCTTCCTCCGATCAGCCGCCCAATTATCCGGGCACTCACGTCATGGGAACACCTATGCCGCCTTCCAACCCCTACGTTCAATATGGCGCTCCTCCACCTCCACCTCCACCTCCCAACAACAACCACAACCTGGATAATGTTCGTAAGAAGCTTAATACATGGGGCAACAAGGCAGAGACCACCGCTACAAACATCTGGACCAATCTGAAAACGGGTCCATCTGTGACTGGATCGGCATGGGGGAAAATGAATTTGACGGCAAAAGCATTAACCGAAGGTGGATTCGAATCTCTATACCGGCAGAACTTCACGGTTTACCCCAACGAGAAACTGAACAGGACTTTTGCCTGTTACTTGTCTACATCCACCGGACCTGTCGCCGGAACCCTGTACCTCTCCAATATTCATGTCGCCTTCTGTAGCGATCGTCCCTTGTCTTCCATCCAACCCAACGGCATGGAGTCTTGGATCTATTACAAAGTCATCGTCCCATTGGAGAAGATAGCCACGGTGAACCCAGTTACGGTGACAGGTAAAAAACAAATAGACAAATATATTCAGATCTCCACAATTGATTCTCAAGATTTCTGGTTCATGGGTTTTGTCAACCACGAGAAAGCGTCAAAACATCTCCTCAACGGTGTCTCCACCGCCCCACGATTTCCTTAA 690 48.7 MNPQPPPSSSDQPPNYPGTHVMGTPMPPSNPYVQYGAPPPPPPPPNNNHNLDNVRKKLNTWGNKAETTATNIWTNLKTGPSVTGSAWGKMNLTAKALTEGGFESLYRQNFTVYPNEKLNRTFACYLSTSTGPVAGTLYLSNIHVAFCSDRPLSSIQPNGMESWIYYKVIVPLEKIATVNPVTVTGKKQIDKYIQISTIDSQDFWFMGFVNHEKASKHLLNGVSTAPRFP 229
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar5g01589 229 Gene3D - 102 223 IPR011993 -
Ccar5g01589 229 PANTHER GEM-LIKE PROTEIN 2 19 223 IPR037848 -
Ccar5g01589 229 Pfam GRAM domain 106 218 IPR004182 -
Ccar5g01589 229 SMART gram2001c 104 182 IPR004182 -
Ccar5g01589 229 MobiDBLite consensus disorder prediction 1 54 - -
Ccar5g01589 229 MobiDBLite consensus disorder prediction 31 48 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar5g01589 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr3:17832764 Ccar5g01589 Ccar-Chr5:36982762 dispersed
Ccar Ccar-Chr15:13332177 Ccar5g01589 Ccar-Chr5:36982762 wgd