AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar5g01593 ATGAAAATGGCGGTTGTTCATCTCCCCCCTTCCTTCTCTCTTTACGCCACTCCTCTCCCTACCTCCGCAGCAGCAGGAGAAGGAGGATTGGATGATGGGAACAGGAAATTCATGGTGGTGGGACACAGAGGTCATGGCATGAACCTCTTACACTCCACCGATACCAGAATGAAAGCCTATAAAGAGAACTCCATTCTTTCCTTCAACAACGCTGCCAATCACCCTTTGGATTTCATTGAGTTTGACGTTCAGGTGACCAAAGATGACATCCCCATCATCTTCCACGACAATTTCATCCTCTCTCAACACAATGCAACTCTTCATTACCTTCCTTTTAACCTTATTGAAAAGAGGGTGACTGATTTGACGCTTCAAGAATTCTTTAGCTATGGTCCTCAACGACAAGTAGGAGAGGTGGGGAAATCTTTGCTCCGGAGAACAAATGGAAATATAGTTGGGTGGGATGTCCAAGCAGATGATCATTCTTGTACCTTACAAGAAGCTTTCCAAAAAGTAAACCCTTGTTTGGGGTTCAACATTGAGTTGAAGTTTGATGATTATATCGTATATCAGCAACACCATCTCACCCATCTTCTTCAACTCATCTTCAAAGTCGTGTCTCAAAATGCCCAACAAAGGCCTGTCATTTTTTCAACCTTCCAGCCTGATGCAGCCTTGCTTATGAAGAAGCTTCAGCATATATACCCTGTTTACTTTTTGACAAATGGAGGAACCCAGGTTTTTGATGATGTGCGAATGAATTCTTTGGAAGAAGCCAAGAAGGTGGCCATACAGGGTGGATTGGATGGAATAGTTTCAGAAGTAATGGGTGTTTTTGGAAACCCGATGGTTGTTAGAGATATTAAAGACTCCAAACTATCTCTCCTTACTTATGGGAAATTGAACAATGTTCCAGAAGCTGTGCAAGTTCAATATCTTATGGGGGTTGAAGGTGTGATTGTTGATTTGGTACAAGAGATTACAGATGCAGTTGCAGATATGAAGGCCAAAAACACAGATTTAGAGAAGATCGAGTTGTCATTTCTGCTTACATTCATTTCACAACTCATTCAACATTAA 1080 41.85 MKMAVVHLPPSFSLYATPLPTSAAAGEGGLDDGNRKFMVVGHRGHGMNLLHSTDTRMKAYKENSILSFNNAANHPLDFIEFDVQVTKDDIPIIFHDNFILSQHNATLHYLPFNLIEKRVTDLTLQEFFSYGPQRQVGEVGKSLLRRTNGNIVGWDVQADDHSCTLQEAFQKVNPCLGFNIELKFDDYIVYQQHHLTHLLQLIFKVVSQNAQQRPVIFSTFQPDAALLMKKLQHIYPVYFLTNGGTQVFDDVRMNSLEEAKKVAIQGGLDGIVSEVMGVFGNPMVVRDIKDSKLSLLTYGKLNNVPEAVQVQYLMGVEGVIVDLVQEITDAVADMKAKNTDLEKIELSFLLTFISQLIQH 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar5g01593 359 ProSiteProfiles GP-PDE domain profile. 37 331 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Ccar5g01593 359 SUPERFAMILY PLC-like phosphodiesterases 36 325 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ccar5g01593 359 Coils Coil 324 344 - -
Ccar5g01593 359 Gene3D Phosphatidylinositol (PI) phosphodiesterase 31 332 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ccar5g01593 359 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 32 337 IPR051578 GO:0046475(PANTHER)
Ccar5g01593 359 FunFam Glycerophosphodiester phosphodiesterase GDPD2 31 333 - -
Ccar5g01593 359 Pfam Glycerophosphoryl diester phosphodiesterase family 42 324 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar5g01593 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr1:11335377 Ccar5g01593 Ccar-Chr5:37004422 wgd
Ccar Ccar-Chr15:13404284 Ccar5g01593 Ccar-Chr5:37004422 wgd