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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar5g01594 CACTTCAACACTCTCTCGCGCAAAACCCCTTCCTTTTTCCTTTCCCTTTTTTCTTCCCTCTCATGGCTTGTCGGCCAATCAAACCCTGAACTGAACTACCCCCCCTTCTTCTCGTCGGACTCCGACTGTTTTCCATTCTTTCTCTTTGTTAATTTATCTATTTGCTTGTTGGAATTGGTGGAGTATCGTCTTCTCTGCTTTATATGCTTTCTTGTATCTCGAGCACATTTACATTCTAACCTACTACTGAAGAAGATCTCAACTCCAGATTTAAATTCACAAAAGCAAAAGATTCAGAAAAAAAACATGATGTACGTGGTCCCTCCTCCCAAGCGTTCCGATCCTTTGTCTGGATCCACAAACGGGTCGGACAACTTGAGAATTTACCAGACATGGAAAGGCAGCAATATATTTTTCCTTCAGGGTAGGTTTGTATTTGGACCTGATGTAAGATCACTGGTGCTGACCATATTCCTCGTCGTAGCTCCTGTTTCAGTTTTTTGTGTTTTCGTTGCTAGAAAGTTGATGTATGACTTTGATGACCACTGGGGAGTATCAGTTATGGTTGTGGCTGTTTTATTCACAATTCATGTTTTAGTGCTTCTTCTTTTAACCTCCGGGAGGGATCCTGGTATCATTCCTCGCAATGCACATCCTCCAGAACCAGAAGGTTTTGATGGAAATACCGAAGGTAGCGCCCAAACCCCACAATTACGGCTGCCTCGTATTAAGGAAGTTGAAGTTAATGGTGCAATTGTGAAGATCAAATATTGTGATACCTGCATGCTTTATAGACCGCCTCGCTGCTCACACTGTTCTATCTGCAACAATTGTGTTGAGCGATTTGATCACCATTGCCCTTGGGTTGGGCAGTGTATAGGTCTGAGAAATTATCGGTTCTTTTTCATGTTTGTCTTCTCCACGACTCTACTATGTATATATGTTTTTAGTTTCTGCTGGATCTACGTAAAGAGGATCATGGATTCGGAGGACATAACATTATGGAAAGCAATGATCAAGACTCCTGCATCGATTGTGTTAATTGTCTACACGTTCATATCAGTGTGGTTTGTGGGTGGCCTCACTGCCTTTCATTTATATCTCATCAGTACTAATCAGACTACATACGAGAACTTTAGATATCGGTATGACAGGCGAGCAAATCCATATAACAAAGGATTGGTAGAGAATTTTGGGGAGATATTTTGCACTAGCATCCCTGCATCAAAGAACAGATTTAGGGGGTACATGCCAAGAGAAGCAGGAGGGATTGGGGGTCGATCAGGATCGGTTGGTGGCGGTTTTGTGAGTCCAAACATGGGGAAGGCTGTGGAGGACATTGAAATGGGAAGGAAGGCGGTGTGGGGTGGTGGGATAGAAGGACAAGCGAGTGACAATGAAGGGGGAAACATGAAAGAAGTGGGAATGGGTGAATTGTCACCGGAGATAAGAACAACGGTGGATGAAGGGGATCGTGCGAACATCATACATGCAAGGCGGTCTAGTTGGGGAAGGAAAAGCGGGAGTTGGGAGATGTCACCTGAAGTAGTTGCTTTAGCATCGAGAGTGGGGGGTGGAGGTGGTAGTAGTAGTGGTGGGGCAGCAGTGAGCTCTCGGCCTCCAGAAGCGAAGTCGTGA 1638 44.69 HFNTLSRKTPSFFLSLFSSLSWLVGQSNPELNYPPFFSSDSDCFPFFLFVNLSICLLELVEYRLLCFICFLVSRAHLHSNLLLKKISTPDLNSQKQKIQKKNMMYVVPPPKRSDPLSGSTNGSDNLRIYQTWKGSNIFFLQGRFVFGPDVRSLVLTIFLVVAPVSVFCVFVARKLMYDFDDHWGVSVMVVAVLFTIHVLVLLLLTSGRDPGIIPRNAHPPEPEGFDGNTEGSAQTPQLRLPRIKEVEVNGAIVKIKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVFSFCWIYVKRIMDSEDITLWKAMIKTPASIVLIVYTFISVWFVGGLTAFHLYLISTNQTTYENFRYRYDRRANPYNKGLVENFGEIFCTSIPASKNRFRGYMPREAGGIGGRSGSVGGGFVSPNMGKAVEDIEMGRKAVWGGGIEGQASDNEGGNMKEVGMGELSPEIRTTVDEGDRANIIHARRSSWGRKSGSWEMSPEVVALASRVGGGGGSSSGGAAVSSRPPEAKS 545
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar5g01594 545 MobiDBLite consensus disorder prediction 521 545 - -
Ccar5g01594 545 Pfam DHHC palmitoyltransferase 255 380 IPR001594 GO:0016409(InterPro)
Ccar5g01594 545 ProSiteProfiles DHHC domain profile. 256 306 - -
Ccar5g01594 545 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 161 421 - GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0006612(PANTHER)|GO:0018230(PANTHER)|GO:0019706(PANTHER)
Ccar5g01594 545 MobiDBLite consensus disorder prediction 215 235 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar5g01594 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr1:17279524 Ccar5g01594 Ccar-Chr5:37007330 dispersed
Ccar Ccar-Chr5:37007330 Ccar6g00715 Ccar-Chr6:18360677 dispersed
Ccar Ccar-Chr5:37007330 Ccar3g00412 Ccar-Chr3:4604163 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00568 ACH 13 449 Lipid Metabolism gene family AT2G46210 69.704 0.0 678.0
Ccar14g00446 ACH 1 297 Lipid Metabolism gene family AT4G22750 48.333 1.12e-76 233.0
Ccar14g00450 . 1 285 Lipid Metabolism gene family AT4G12110 59.649 5.77e-140 394.0
Ccar14g00415 . 38 430 Lipid Metabolism gene family AT2G45150 60.199 3.31e-157 447.0
Ccar11g01287 . 22 138 Lipid Metabolism gene family AT5G51210 44.167 2.19e-29 102.0
Ccar11g01023 ACH 1 298 Lipid Metabolism gene family AT4G12110 73.826 4.05e-172 476.0
Ccar11g00960 . 2 1011 Lipid Metabolism gene family AT4G11610 74.02 0.0 1570.0
Ccar11g00948 ACH 52 115 Lipid Metabolism gene family AT1G24470 34.375 4.52e-06 45.4
Ccar11g00621 ACH 1 381 Lipid Metabolism gene family AT3G12120 59.58 5.51e-173 485.0
Ccar11g00620 . 1 382 Lipid Metabolism gene family AT3G12120 57.068 2.29e-159 487.0
Ccar11g00619 . 1 381 Lipid Metabolism gene family AT3G12120 56.955 4.62e-171 480.0
Ccar11g00618 . 1 377 Lipid Metabolism gene family AT3G12120 57.294 1.39e-167 478.0
Ccar11g00575 . 246 538 Lipid Metabolism gene family AT3G61300 25.846 7.83e-10 60.1
Ccar11g00210 ACH 215 382 Lipid Metabolism gene family AT3G12120 71.429 5.17e-87 263.0
Ccar16g00796 ACH 1 297 Lipid Metabolism gene family AT4G22750 61.13 5.93e-118 339.0
Ccar16g00016 . 71 155 Lipid Metabolism gene family AT4G25140 36.471 1.63e-12 60.5
Ccar7g00836 . 5 1121 Lipid Metabolism gene family AT5G64070 55.666 0.0 1169.0
Ccar7g00709 . 28 157 Lipid Metabolism gene family AT4G22750 34.091 2.19e-14 71.2
Ccar7g00625 ACH 126 158 Lipid Metabolism gene family AT4G22750 54.545 1.12e-08 54.3
Ccar7g00462 . 9 340 Lipid Metabolism gene family AT3G02600 59.036 1.53e-144 410.0
Ccar7g00076 ACH 44 157 Lipid Metabolism gene family AT3G01570 54.386 2.10e-40 138.0
Ccar8g00655 . 3 227 Lipid Metabolism gene family AT1G68000 67.241 3.28e-115 328.0
Ccar8g00232 . 9 340 Lipid Metabolism gene family AT5G19980 71.261 8.49e-174 486.0
Ccar8g00085 ACH 105 487 Lipid Metabolism gene family AT2G19450 64.872 5.94e-173 494.0
Ccar9g00798 . 11 1012 Lipid Metabolism gene family AT1G04150 62.451 0.0 1277.0
Ccar9g00693 . 22 174 Lipid Metabolism gene family AT2G48140 42.675 1.55e-29 106.0
Ccar9g00679 . 13 136 Lipid Metabolism gene family AT3G22600 48.0 3.57e-33 113.0
Ccar9g00504 . 51 256 Lipid Metabolism gene family AT4G22750 25.455 1.67e-11 63.5
Ccar9g00408 ACH 1 265 Lipid Metabolism gene family AT1G07420 79.851 2.41e-160 444.0
Ccar9g00356 . 39 160 Lipid Metabolism gene family AT5G64080 41.406 3.10e-20 83.2
Ccar9g00254 ACH 1 442 Lipid Metabolism gene family AT3G11170 56.182 7.89e-174 490.0
Ccar9g00222 . 47 271 Lipid Metabolism gene family AT4G22750 34.177 8.85e-31 115.0
Ccar9g00015 . 78 148 Lipid Metabolism gene family AT4G22750 32.184 1.47e-09 57.0
Ccar15g01413 . 1 379 Lipid Metabolism gene family AT3G12120 54.881 3.73e-154 436.0
Ccar15g01412 . 1 379 Lipid Metabolism gene family AT3G12120 57.784 1.94e-168 473.0
Ccar15g01411 . 1 379 Lipid Metabolism gene family AT3G12120 56.955 1.45e-169 477.0
Ccar15g01410 . 1 379 Lipid Metabolism gene family AT3G12120 57.218 1.27e-169 477.0
Ccar15g01409 . 1 379 Lipid Metabolism gene family AT3G12120 57.48 1.18e-169 478.0
Ccar15g01220 . 50 249 Lipid Metabolism gene family AT1G67730 28.571 7.90e-12 63.5
Ccar15g01026 ACH 1 295 Lipid Metabolism gene family AT4G12110 73.22 5.11e-167 463.0
Ccar15g00917 . 105 202 Lipid Metabolism gene family AT5G61610 33.333 1.17e-06 48.5
Ccar15g00811 . 79 170 Lipid Metabolism gene family AT3G22600 46.875 2.91e-18 72.8
Ccar15g00771 . 38 262 Lipid Metabolism gene family AT4G22750 27.907 7.02e-16 76.3
Ccar15g00518 . 7 1017 Lipid Metabolism gene family AT3G03680 69.846 0.0 1429.0
Ccar15g00482 . 244 499 Lipid Metabolism gene family AT3G61300 27.465 1.17e-12 68.9
Ccar15g00349 . 104 158 Lipid Metabolism gene family AT4G22750 41.818 3.05e-09 56.6
Ccar15g00245 ACH 1 289 Lipid Metabolism gene family AT1G15080 66.45 3.65e-138 394.0
Ccar12g00990 . 25 419 Lipid Metabolism gene family AT1G62430 72.152 0.0 573.0
Ccar12g00815 . 241 1036 Lipid Metabolism gene family AT5G48060 72.055 0.0 1202.0
Ccar12g00673 . 1 625 Lipid Metabolism gene family AT1G02190 48.49 0.0 592.0
Ccar12g00675 . 45 430 Lipid Metabolism gene family AT2G44520 59.413 2.99e-173 491.0
Ccar12g00645 . 3 1011 Lipid Metabolism gene family AT4G11610 64.503 0.0 1360.0
Ccar12g00612 ACH 1 449 Lipid Metabolism gene family AT2G46210 70.222 0.0 692.0
Ccar12g00264 ACH 45 363 Lipid Metabolism gene family AT3G02600 65.337 4.55e-161 452.0
Ccar4g00751 . 17 627 Lipid Metabolism gene family AT5G57800 44.212 4.58e-162 470.0
Ccar4g00251 ACH 15 393 Lipid Metabolism gene family AT2G33630 30.28 1.43e-41 154.0
Ccar4g00219 . 115 262 Lipid Metabolism gene family AT4G22750 32.278 1.99e-16 77.4
Ccar6g00791 ACH 16 118 Lipid Metabolism gene family AT3G01570 46.154 1.88e-27 97.8
Ccar6g00715 ACH 51 159 Lipid Metabolism gene family AT4G22750 31.092 1.69e-15 74.7
Ccar6g00571 . 32 207 Lipid Metabolism gene family AT1G62430 47.727 5.64e-47 154.0
Ccar6g00333 . 1 1029 Lipid Metabolism gene family AT1G22610 67.969 0.0 1424.0
Ccar6g00280 . 4 193 Lipid Metabolism gene family AT2G48140 36.181 4.19e-18 76.6
Ccar6g00162 . 55 159 Lipid Metabolism gene family AT4G22750 36.364 7.27e-15 72.8
Ccar10g01099 . 1 1047 Lipid Metabolism gene family AT5G17980 63.73 0.0 1353.0
Ccar10g01019 . 84 275 Lipid Metabolism gene family AT3G02580 53.646 2.58e-72 217.0
Ccar10g01018 . 4 276 Lipid Metabolism gene family AT3G02580 61.905 2.71e-138 389.0
Ccar10g00802 . 1 170 Lipid Metabolism gene family AT3G22600 50.575 2.62e-51 160.0
Ccar10g00797 . 1 170 Lipid Metabolism gene family AT3G22600 49.425 1.25e-50 158.0
Ccar10g00798 . 1 169 Lipid Metabolism gene family AT3G22600 47.059 1.90e-45 145.0
Ccar10g00495 . 7 773 Lipid Metabolism gene family AT3G57880 65.375 0.0 1079.0
Ccar10g00497 . 3 1036 Lipid Metabolism gene family AT5G48060 63.223 0.0 1340.0
Ccar10g00289 . 102 160 Lipid Metabolism gene family AT4G22750 35.593 3.32e-06 43.1
Ccar10g00163 . 1 332 Lipid Metabolism gene family AT4G04930 72.754 0.0 504.0
Ccar10g00005 . 280 399 Lipid Metabolism gene family AT4G11610 35.246 5.17e-16 81.6
Ccar17g01221 ACH 179 516 Lipid Metabolism gene family AT2G19450 56.684 1.64e-132 386.0
Ccar17g01222 . 105 163 Lipid Metabolism gene family AT2G19450 45.556 1.44e-16 75.1
Ccar17g01061 . 41 298 Lipid Metabolism gene family AT1G51570 25.965 1.66e-12 67.8
Ccar17g00687 . 270 419 Lipid Metabolism gene family AT1G62430 78.0 9.39e-86 258.0
Ccar17g00039 . 33 180 Lipid Metabolism gene family AT3G01570 27.815 2.81e-18 76.6
Ccar5g01594 . 50 260 Lipid Metabolism gene family AT4G22750 31.441 2.97e-19 86.7
Ccar5g01544 ACH 29 175 Lipid Metabolism gene family AT3G01570 48.98 1.20e-44 145.0
Ccar5g01569 . 7 317 Lipid Metabolism gene family AT1G67730 64.952 6.69e-161 449.0
Ccar5g01419 . 15 677 Lipid Metabolism gene family AT1G73920 56.483 0.0 718.0
Ccar5g01227 . 4 273 Lipid Metabolism gene family AT3G02580 62.733 3.03e-148 416.0
Ccar5g01012 . 43 248 Lipid Metabolism gene family AT5G60510 45.455 1.10e-63 197.0
Ccar5g00682 . 35 259 Lipid Metabolism gene family AT5G60510 28.879 2.06e-23 94.4
Ccar5g00500 . 1 370 Lipid Metabolism gene family AT3G12120 74.933 0.0 607.0
Ccar5g00512 ACH 1 773 Lipid Metabolism gene family AT3G57880 87.758 0.0 1442.0
Ccar5g00387 ACH 56 263 Lipid Metabolism gene family AT1G07420 58.173 4.69e-74 222.0
Ccar5g00346 ACH 80 434 Lipid Metabolism gene family AT5G05580 60.504 1.22e-159 452.0
Ccar5g00100 . 24 77 Lipid Metabolism gene family AT3G22600 61.111 5.12e-18 73.2
Ccar13g01419 . 11 349 Lipid Metabolism gene family AT3G12120 52.802 7.10e-137 399.0
Ccar13g01366 . 36 153 Lipid Metabolism gene family AT4G25140 71.186 3.36e-48 151.0
Ccar13g01357 . 1 183 Lipid Metabolism gene family AT3G12120 50.802 2.11e-60 195.0
Ccar13g01336 . 296 511 Lipid Metabolism gene family AT1G22610 26.389 5.67e-10 61.2
Ccar13g00938 . 1 433 Lipid Metabolism gene family AT5G05580 73.756 0.0 678.0
Ccar13g00808 ACH 103 295 Lipid Metabolism gene family AT2G39290 79.082 1.73e-102 301.0
Ccar13g00779 . 221 492 Lipid Metabolism gene family AT3G61300 26.871 8.00e-12 66.6
Ccar13g00567 ACH 247 498 Lipid Metabolism gene family AT3G61300 27.027 5.14e-12 66.6
Ccar13g00400 ACH 47 364 Lipid Metabolism gene family AT3G02600 50.898 9.11e-111 325.0
Ccar13g00277 . 104 159 Lipid Metabolism gene family AT4G22750 42.857 1.09e-09 58.2
Ccar13g00291 . 7 271 Lipid Metabolism gene family AT5G60510 43.357 2.51e-78 243.0
Ccar13g00203 . 3 371 Lipid Metabolism gene family AT1G76340 78.933 0.0 573.0
Ccar3g01486 ACH 51 262 Lipid Metabolism gene family AT4G22750 28.696 7.90e-20 87.4
Ccar3g01332 . 55 255 Lipid Metabolism gene family AT1G24470 27.468 2.18e-11 62.0
Ccar3g01338 ACH 6 154 Lipid Metabolism gene family AT3G01570 40.764 9.24e-36 120.0
Ccar3g01236 . 10 1081 Lipid Metabolism gene family AT1G74720 69.565 0.0 1513.0
Ccar3g01144 . 46 119 Lipid Metabolism gene family AT1G48990 48.718 2.02e-08 50.1
Ccar3g01138 . 1 677 Lipid Metabolism gene family AT1G73920 68.029 0.0 917.0
Ccar3g00837 . 47 160 Lipid Metabolism gene family AT4G22750 45.614 1.19e-28 107.0
Ccar3g00386 ACH 62 380 Lipid Metabolism gene family AT2G33630 30.792 9.37e-38 144.0
Ccar3g00412 . 54 260 Lipid Metabolism gene family AT4G22750 30.303 1.87e-16 78.2
Ccar3g00335 . 117 158 Lipid Metabolism gene family AT4G22750 45.238 4.13e-07 50.4
Ccar3g00136 ACH 34 302 Lipid Metabolism gene family AT2G01180 44.074 3.57e-73 223.0
Ccar1g02572 . 243 477 Lipid Metabolism gene family AT2G33630 57.021 6.09e-90 270.0
Ccar1g02563 . 117 158 Lipid Metabolism gene family AT4G22750 45.238 6.30e-07 49.7
Ccar1g02025 . 10 289 Lipid Metabolism gene family AT2G33630 27.74 1.22e-25 108.0
Ccar1g01922 . 2 170 Lipid Metabolism gene family AT3G22600 47.514 5.88e-45 144.0
Ccar1g01794 . 1 303 Lipid Metabolism gene family AT2G34980 71.287 7.95e-133 377.0
Ccar1g01499 . 12 270 Lipid Metabolism gene family AT5G60510 47.445 3.55e-83 251.0
Ccar1g01480 ACH 62 253 Lipid Metabolism gene family AT4G22750 24.171 1.02e-12 65.9
Ccar1g01380 . 51 362 Lipid Metabolism gene family AT3G02600 47.425 1.94e-106 317.0
Ccar1g01361 . 4 273 Lipid Metabolism gene family AT3G02580 78.148 2.87e-163 452.0
Ccar1g01051 . 1 157 Lipid Metabolism gene family AT3G01570 44.311 1.14e-43 142.0
Ccar1g00795 . 1 773 Lipid Metabolism gene family AT3G57880 73.677 0.0 1229.0
Ccar1g00791 ACH 1 382 Lipid Metabolism gene family AT3G12120 70.157 0.0 579.0
Ccar1g00467 ACH 25 231 Lipid Metabolism gene family AT3G55030 71.564 1.89e-105 306.0
Ccar1g00274 . 1 434 Lipid Metabolism gene family AT3G11170 73.913 0.0 667.0
Ccar2g02250 . 35 148 Lipid Metabolism gene family AT3G01570 27.826 8.08e-12 58.5
Ccar2g01614 . 7 181 Lipid Metabolism gene family AT5G64080 49.727 5.21e-52 163.0
Ccar2g01241 . 306 344 Lipid Metabolism gene family AT1G62430 73.81 2.19e-12 61.6
Ccar2g00855 . 38 298 Lipid Metabolism gene family AT1G51570 26.667 6.27e-15 76.3
Ccar2g00797 . 3 482 Lipid Metabolism gene family AT5G57800 61.875 0.0 607.0
Ccar2g00655 ACH 103 375 Lipid Metabolism gene family AT2G29980 45.161 4.21e-92 279.0
Ccar2g00510 . 186 383 Lipid Metabolism gene family AT3G12120 58.081 1.37e-80 255.0
Ccar2g00509 . 1 383 Lipid Metabolism gene family AT3G12120 58.486 3.16e-175 491.0
Ccar2g00508 . 1 381 Lipid Metabolism gene family AT3G12120 57.48 1.12e-162 482.0
Ccar2g00511 . 1 383 Lipid Metabolism gene family AT3G12120 57.963 7.82e-173 485.0
Ccar2g00502 . 1 382 Lipid Metabolism gene family AT3G12120 61.198 0.0 513.0
Ccar2g00501 . 14 382 Lipid Metabolism gene family AT3G12120 59.73 1.60e-173 487.0
Ccar2g00503 . 214 326 Lipid Metabolism gene family AT3G12120 56.637 2.26e-44 148.0
Ccar2g00500 . 1 383 Lipid Metabolism gene family AT3G12120 61.619 2.18e-177 512.0
Ccar2g00477 . 1 794 Lipid Metabolism gene family AT5G06850 78.338 0.0 1352.0
Ccar2g00478 ACH 1 773 Lipid Metabolism gene family AT3G57880 87.226 0.0 1442.0
Ccar2g00381 . 72 159 Lipid Metabolism gene family AT4G22750 33.333 1.14e-13 68.9
Ccar2g00380 . 115 159 Lipid Metabolism gene family AT4G22750 51.111 2.21e-12 64.7
Ccar2g00132 . 5 106 Lipid Metabolism gene family AT3G22600 55.34 8.97e-31 110.0