AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar5g01596 ATGGAGGCAGATCAAGATCCATCAAACCTCCACCTCCATGACGATACTCTCACCCAACAGATTGATCGATTCATCTCTTCCCATGATCCGCCTGATCACATATTGGAATCCGTTCAATGTTTTTCCCTTCTTTTTGATGAAGAGGTCGTTCAATACGAATCAGGTACCAAGAAATGGACTCTCCATGAAACCTCTTCTTTTCTAGTTTCCGTTGAACGCACATCCAAGCTTCTCCATTCTCTCTCCAGATTTCAATCTCAAGACGATTACGCCGCTGCCATAAACCAGATCAGTGGTATTCATCAACGTGCCATGTCGTTTATGGAGGACGAATTCAAGTCCATTCTCGATGATTACCAGACTTCACACGATCGAGATCAAAAGAATCTTGATGAAGCAGCCTCGTCTCCATCCGATGATCAACCTCAACCGGATGATCAACCCGTCGATGATAATTCTAAAGATAATTTTCTAGGATATTCAGACGACATGATATCAAATCTCAAGAAATTAGCCAAGGGATTGATAGGAGGAGGTCACCAGACAGAGTGTAGCGAATTATATTTCTTTGTTCGAAGAAATGCAATCGAACACAACTTGAAGCTTTTACCCTTTGAAAAGTTTTCAATCGACGAAATGCAGAAGATGCAGTGGGAGCCTATAGAGAAAGAGGTTTCTGCATGGACGAAGATGTTCAAAGACTTTACAACCTCGCTCCTCCCTAGCGAGCGGAGGCTGGTAGACGCCGTCTTCTCCTCCTCCTCCTCCGCAATCTCCGACAGCTTATTTGGTAACCTAGCACGAATTGTCCTATTTTACTTTCTCACTTTTGCGGAAGGCGTCATGATGACGAAGCGAGCCGCTGAGAAACTGTTCAAGTTTCTCGACATTTACGAGGCATTAAGAGACAGCATTCCACAAGTGGAGAAATATCTTTCTGATGACTGGTTACTCCAACTCAGATCCGTTGCCTCGTTGATTAATAACATGCTAGGGGATGCTATTTTCACCATTTTCGGAGAGCTTGAGAACTCGATCAAAGCAGATACAGGCAAAACGCCGGTTCCTGGCGGAGCAGTACATCCTCTAACTCGCTACACCATGAATTATCTGAAACTAGCCTGCGAGTACAGGGACACATTGCAGCAAGTATTCAGAGAGCATAAAAAGATCATAGATCGAGCGGACTCGGCCACAGGTTCGGATTGGGATCCGAGTTCTGAAGAGGTAACACAGAACGTTGATGAGGATCATGGATCGTCATTCCAATTGCAATTGGGCAGAGTGATGGATCTGTTGGATGCAAACCTGGAAGCAAAATCAAAGCTGTACAAAGATCCGTCGTTGAGCTTGATTTTCCTGATGAACAACGGACGATACATATTACAGAAGACAAAAGGAACGGGGGAGATGAGGAGCTTGATGGGAGATCCATGGGTGAGGAAACGGTCGTCGGATCTGAGGAGTTACCACACCAACTACAAGAGAGAAACATGGACAAAGCTGTTGCAGTGTCTGAGTCATGAAGGATTGAGCGTGAACGGGAAGGTGATGAAGCCGGTGCTGAAGGAGAGATTCAAGAGTTTCAACGCGATGTTCGACGAAATACATAGAACACAAAGCACATGGGTGGTGAGTGATGAACAGCTTCAGTCAGAACTGAGGGTGTCCATATCGGCGATAGTAATTCCGGCGTATAGGTCGTTCATGGGGAGGTTCAGTCAAGTGTTTACTCCGGGAAGGCAAACGGAGAAGTACATAAAATATCAGCCGGAAGATATAGAAACATGCATCGAAGAGCTGTTTGATGGGAATGCAGCTCAGCAAGGCAAGAAGAGATGA 1842 45.28 MEADQDPSNLHLHDDTLTQQIDRFISSHDPPDHILESVQCFSLLFDEEVVQYESGTKKWTLHETSSFLVSVERTSKLLHSLSRFQSQDDYAAAINQISGIHQRAMSFMEDEFKSILDDYQTSHDRDQKNLDEAASSPSDDQPQPDDQPVDDNSKDNFLGYSDDMISNLKKLAKGLIGGGHQTECSELYFFVRRNAIEHNLKLLPFEKFSIDEMQKMQWEPIEKEVSAWTKMFKDFTTSLLPSERRLVDAVFSSSSSAISDSLFGNLARIVLFYFLTFAEGVMMTKRAAEKLFKFLDIYEALRDSIPQVEKYLSDDWLLQLRSVASLINNMLGDAIFTIFGELENSIKADTGKTPVPGGAVHPLTRYTMNYLKLACEYRDTLQQVFREHKKIIDRADSATGSDWDPSSEEVTQNVDEDHGSSFQLQLGRVMDLLDANLEAKSKLYKDPSLSLIFLMNNGRYILQKTKGTGEMRSLMGDPWVRKRSSDLRSYHTNYKRETWTKLLQCLSHEGLSVNGKVMKPVLKERFKSFNAMFDEIHRTQSTWVVSDEQLQSELRVSISAIVIPAYRSFMGRFSQVFTPGRQTEKYIKYQPEDIETCIEELFDGNAAQQGKKR 613
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar5g01596 613 MobiDBLite consensus disorder prediction 123 156 - -
Ccar5g01596 613 Gene3D Exocyst complex component Exo70 46 612 - -
Ccar5g01596 613 PANTHER EXOCYST COMPLEX PROTEIN EXO70 55 605 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Ccar5g01596 613 Pfam Exocyst complex component Exo70 N-terminal 63 117 - -
Ccar5g01596 613 Pfam Exo70 exocyst complex subunit C-terminal 227 600 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Ccar5g01596 613 SUPERFAMILY Cullin repeat-like 61 603 IPR016159 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar5g01596 K07195 exocyst complex component 7
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr13:37532 Ccar5g01596 Ccar-Chr5:37018183 dispersed
Ccar Ccar-Chr5:4179376 Ccar5g01596 Ccar-Chr5:37018183 dispersed
Ccar Ccar-Chr5:37018183 Ccar9g00951 Ccar-Chr9:17630557 dispersed
Ccar Ccar-Chr5:37018183 Ccar12g00013 Ccar-Chr12:114000 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar11g00461 . 7 631 EXO70 exocyst subunit family AT5G52340 68.153 0.0 884.0
Ccar16g00347 . 9 684 EXO70 exocyst subunit family AT4G31540 70.858 0.0 991.0
Ccar7g00232 . 9 658 EXO70 exocyst subunit family AT3G29400 48.48 0.0 577.0
Ccar8g01155 ACH 25 633 EXO70 exocyst subunit family AT1G72470 65.267 0.0 781.0
Ccar9g00951 ACH 1 624 EXO70 exocyst subunit family AT5G58430 63.453 0.0 785.0
Ccar12g00013 . 59 653 EXO70 exocyst subunit family AT5G13150 45.082 1.72e-172 505.0
Ccar4g00929 ACH 23 633 EXO70 exocyst subunit family AT1G72470 66.878 0.0 818.0
Ccar4g00571 ACH 12 636 EXO70 exocyst subunit family AT4G31540 28.049 2.98e-67 232.0
Ccar5g01596 . 113 684 EXO70 exocyst subunit family AT5G13990 47.826 0.0 536.0
Ccar5g00310 ACH 1 624 EXO70 exocyst subunit family AT5G58430 60.315 0.0 748.0
Ccar13g00687 ACH 7 638 EXO70 exocyst subunit family AT5G03540 79.245 0.0 1001.0
Ccar13g00005 . 72 621 EXO70 exocyst subunit family AT5G13150 41.373 2.19e-138 416.0
Ccar3g01819 . 11 436 EXO70 exocyst subunit family AT4G31540 42.857 1.58e-108 347.0
Ccar3g01787 ACH 16 633 EXO70 exocyst subunit family AT1G72470 65.561 0.0 800.0
Ccar3g01432 . 24 682 EXO70 exocyst subunit family AT5G50380 58.42 0.0 743.0
Ccar3g00219 ACH 8 632 EXO70 exocyst subunit family AT5G03540 74.046 0.0 966.0
Ccar1g00669 . 32 608 EXO70 exocyst subunit family AT3G09520 52.577 0.0 593.0
Ccar1g00452 . 1 611 EXO70 exocyst subunit family AT2G39380 45.292 2.23e-168 493.0