AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01342 ATGACATTGAGGCAAAACAGCAGCTTCCTTGTGTTAATGGCGGTCATTAGCATCTTATCGCCATTAATGGAGCTCGGAGCTATCCAAATCGAAGCAACAACAACAAATACAACAAAAAAAACAACTGCTACTGGATGCGATTTGTTTCAAGGAAATTGGATTTCAGATGCATCGTATCCACTGTATAATGAATCCACATGTCCTTTCCTTGAAAAAGAGTTCAACTGCGTTAACAATGGCCGTCCTGACCGTTTCTATCTCAAATACCGATGGCAACCTCACGGCTGCCGTTTATCCAGATTTGATGGTCGAAACTTCTTAGAAAAACTAAGAGGAAAAACAATAATGTTTGTAGGAGATTCGCTTAGCCGAAACCAGTGGTTGTCGATGTTGTGCATACTACATTCGTCAGTGCCAACTGCAAACTACGCAGCCAATATCTCCGTGATTATGGATATGACCACTTACACCTTCACGGATTATGGGGTGAAAGTGATATACCATCACAATTTATATCTAGTGGATATTGTGAAGAGGAGATTTGGGAGGGTCTTGAATTTGGGTAGTTTGACAGCTGGCAAGCTGTGGTTGGATGTTGATTACCTTGTGTTCAACACGTGGCACTGGTGGAACCGTAGAGGAGCCAGCCAACCATTCGATTATATACAAGACGGAAATCGTATATACAAAGACATGGATAGAGTAGTTGCTTTCGGAAAGGCTGTTACCACATGGGGTAAATGGGTCGATGCATATGTTGTTCCGAATAAAACGCAAGTGTTTTTTCAAGGGATATCGCCTTCACATTACAATGGCACCGACTGGGGAGATCCCAAGTCAAAATCCTGCTCCGGCCAAAAAATGCCCCTTCTGAGCTCCACCTATCCTGGAGTTTCACCACCGGCACTGTCAGTACTCAAGAATGCACTTAAAACCATCAAGAAACGTGTGACTTTGCTCGATATAACCACCCTTTCTCTGTTGCGGAAAGATGGCCATCCGTCGGCTTACGGGTTAGGGCCGATTGATTGCAGCCACTGGTGTCTCGCCGGAGTTCCAGATACGTGGAACATTTTGCTATACAATCTCATGTTTTAA 1098 43.9 MTLRQNSSFLVLMAVISILSPLMELGAIQIEATTTNTTKKTTATGCDLFQGNWISDASYPLYNESTCPFLEKEFNCVNNGRPDRFYLKYRWQPHGCRLSRFDGRNFLEKLRGKTIMFVGDSLSRNQWLSMLCILHSSVPTANYAANISVIMDMTTYTFTDYGVKVIYHHNLYLVDIVKRRFGRVLNLGSLTAGKLWLDVDYLVFNTWHWWNRRGASQPFDYIQDGNRIYKDMDRVVAFGKAVTTWGKWVDAYVVPNKTQVFFQGISPSHYNGTDWGDPKSKSCSGQKMPLLSSTYPGVSPPALSVLKNALKTIKKRVTLLDITTLSLLRKDGHPSAYGLGPIDCSHWCLAGVPDTWNILLYNLMF 365
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01342 365 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 17 363 IPR029962 GO:0005794(PANTHER)|GO:0016413(InterPro)|GO:0016413(PANTHER)
Ceso2g01342 365 Pfam GDSL-SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 98 362 IPR026057 GO:0016740(InterPro)
Ceso2g01342 365 Pfam PMR5 N terminal Domain 45 96 IPR025846 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01342 K23877 xyloglucan O-acetyltransferase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:27120716 Ceso8g01023 Ceso-Chr8:13503099 dispersed
Ceso Ceso-Chr2:27120716 Ceso4g01571 Ceso-Chr4:27582619 wgd
Ceso Ceso-Chr2:27120716 Ceso6g02230 Ceso-Chr6:58737915 wgd