AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01343 ATGAGGTGTAACGCATGCTGGCGGGAGCTGGAAGGGAGAGCCATTTCTACCACATGTGGTCATATCTTCTTGTTAAAAGGCAATGAAGATGCCAGTAAGATACTAAGTAGTGATGCAGCTTGTCCGATATGTGATCAAGTACTTTCTAAAAGCCTCATGAAACCTCTGGATATCAACCCAAGTGATGAATGGACAAATGTAAGAAAGCATATCCAAATAGCCTTCTTCAGTTCTAACTTTCTTCACATGATCACTGCAGATGGCTATGGCTGGCATTTCTCCACAGATACAAGTGTTATGTTCTACATTGGACAAAAGGAACTAGAACTTCAGTTCAAGATGAACAGGATAGTAGCTCAATGTCGGGAAAAATGCGAGGCAATGCAAGAGAAGTTCACACAAAAAATGGAGCAGCTGCATACTGCATATCAGAAAATGGCCAAAAGGTGTCAAATGATGGAACAACAGATTGAAAACTTGTCCAAAGATAAACAGGAACTCCAAGAAAAGTTTTCTGAGAAATCAAGGCAAAAGAGAAAACTGGAAGAGATGTATGATCAATTGAGAGGTGAGTATGAATCCATCAAACGTTCGGCCATTCAACCTGCAAACAACTTCTTCTCAAGGGCACAACCTGATCCGTTTGACAGTCCAGCTAATATGATGGATAATAGAAATTCCATGCGGAAAGATCGGTCGGTTTCCACCCCTGAAACTCCAGGACCACGCGAAGATATATGGCCACCAGCTACAAGGCAGAACAGTGGTAATTCTGGGCAATTCGACATTCCAGCAATGCCAGTTGAGAACAGAAGACCTGTTGGTGGAGGTGGTGGTGGTGGTGGAGCAAGCAATCCCTCTATGACTTTGAGAAATCTCATATTATCACCAATGAAACGGCCTCAACTCTCTCGTAGCCGACCTCAGCTGTTCACGTAA 939 43.13 MRCNACWRELEGRAISTTCGHIFLLKGNEDASKILSSDAACPICDQVLSKSLMKPLDINPSDEWTNVRKHIQIAFFSSNFLHMITADGYGWHFSTDTSVMFYIGQKELELQFKMNRIVAQCREKCEAMQEKFTQKMEQLHTAYQKMAKRCQMMEQQIENLSKDKQELQEKFSEKSRQKRKLEEMYDQLRGEYESIKRSAIQPANNFFSRAQPDPFDSPANMMDNRNSMRKDRSVSTPETPGPREDIWPPATRQNSGNSGQFDIPAMPVENRRPVGGGGGGGGASNPSMTLRNLILSPMKRPQLSRSRPQLFT 312
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01343 312 MobiDBLite consensus disorder prediction 206 312 - -
Ceso2g01343 312 SUPERFAMILY Myosin rod fragments 123 196 - -
Ceso2g01343 312 Coils Coil 136 198 - -
Ceso2g01343 312 SUPERFAMILY RING-U-box 2 53 - -
Ceso2g01343 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 312 - GO:0051026(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01343 K10639 E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:27147929 Ceso2g01362 Ceso-Chr2:27551986 dispersed
Ceso Ceso-Chr2:27147929 Ceso2g01351 Ceso-Chr2:27251107 proximal
Ceso Ceso-Chr2:27147929 Ceso2g01352 Ceso-Chr2:27259491 proximal