AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01396 ATGGCCACCGTCGGAGCAACTCATTTCTTCTCTTCATCCTCCGCCGCCGCCGCCATTGACCACCGGAGACACCTCCGTGCTTCCTCCTTATCATTCTCCGGCGACAAGTTATTTTCAGCATCCTCCGTCCGACGACGTCGTTACGGAGGAGGTGGTAGAAGAACTTCGGTGATCGTTTCTCCAAAAGCTGTTTCTGATTCTAAAAATTCGCAGACATGTCTTGATCCTGACGCTAGTCAAAGCGTCCTGGGGATAATACTTGGAGGTGGAGCCGGGACGCGCCTTTACCCTTTAACAAAGAAGAGGGCAAAGCCTGCTGTTCCTTTGGGAGCAAACTACAGGCTTATTGATATTCCTGTTAGCAACTGCTTGAACAGCAATGTATCCAAGATTTATGTTCTTACACAGTTCAACTCTGCATCACTCAATCGCCACCTTTCACGTGCCTATGCAAGTAACATGGGTGGCTACAAGAATGAAGGGTTTGTTGAAGTCCTTGCTGCTCAACAGAGTCCAGAGAACCCAAACTGGTTTCAGGGTACTGCTGATGCTGTAAGACAGTATTTGTGGCTGTTTGAAGAGCACAATGTTCTAGAGTTCCTAATCCTTGCCGGAGATCATTTATACCGAATGGATTATGAGAGATTTATTCAAGCTCACAGAGAAACGGATGCTGATATTACTGTAGCAGCTCTGCCAATGGATGAAAAACGTGCGACTGCATTTGGTCTAATGAAGATTGATGAAGAAGGGCGTATAATTGAGTTTGCAGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGAAAGTTGATACCACAATTTTAGGCCTTGATGAAGAAAGGGCTAAAGAAATGCCTTATATTGCTAGTATGGGTATATATGTCATCAGCAAAGATGTAATGTTGAATTTGCTGCGAGATAAGTTCCCTGGAGCCAACGATTTTGGAAGTGAAGTAATTCCTGGAGCAACTTCTATTGGGCTAAGAGTACAAGCTTACCTTTATGATGGCTACTGGGAAGATATTGGTACTATTGAGGCTTTCTATAACGCCAATTTGGGGATCACGAAAAAGCCAGTGCCAGATTTTAGTTTCTACGATCGTTCGTCCCCCATTTACACCCAACCTCGATACTTGCCTCCTTCCAAGATGCTTGATGCTGATGTCACCGATAGCGTTATCGGTGAAGGGTGTATGATTAAGAACTGCAAAATTCATCATTCAGTTGTTGGGCTTCGATCTTGCATAGCTGAAGGTGCCATCATTGAAGATTCATTGCTGATGGGAGCAGATTATTATGAGACGGATGCTGACAGGGAGCTTCTTGCTGCGAAAGGTAGTGTTCCAATTGGTATTGGAAGGAACACTCATATTAAAAGAGCCATCATCGACAAGAATGCACGCATAGGAGACAATGTGAAGATTATAAACAGCGATAACGTCCAAGAAGCAGCAAGGGAAACAGATGGATACTTCATAAAAAGCGGAATCGTGACGGTGATCAAAGATGTGTTGATTCCTTCGGGCACCATAATATGA 1539 44.18 MATVGATHFFSSSSAAAAIDHRRHLRASSLSFSGDKLFSASSVRRRRYGGGGRRTSVIVSPKAVSDSKNSQTCLDPDASQSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDEERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCMIKNCKIHHSVVGLRSCIAEGAIIEDSLLMGADYYETDADRELLAAKGSVPIGIGRNTHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDVLIPSGTII 512
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01396 512 FunFam Glucose-1-phosphate adenylyltransferase 63 377 - -
Ceso2g01396 512 SUPERFAMILY Trimeric LpxA-like enzymes 375 512 IPR011004 -
Ceso2g01396 512 FunFam Glucose-1-phosphate adenylyltransferase 378 512 - -
Ceso2g01396 512 SUPERFAMILY Nucleotide-diphospho-sugar transferases 81 473 IPR029044 -
Ceso2g01396 512 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 177 185 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Ceso2g01396 512 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 289 299 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Ceso2g01396 512 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 47 512 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Ceso2g01396 512 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 88 107 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Ceso2g01396 512 Pfam Nucleotidyl transferase 84 357 IPR005835 GO:0009058(InterPro)
Ceso2g01396 512 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 62 377 IPR029044 -
Ceso2g01396 512 Gene3D Hexapeptide repeat proteins 378 512 - -
Ceso2g01396 512 CDD ADP-Glucose-PP 93 342 - -
Ceso2g01396 512 CDD LbH-G1P-AT-C 380 506 - -
Ceso2g01396 512 NCBIfam glucose-1-phosphate adenylyltransferase 82 476 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01396 K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:28635132 Ceso2g03562 Ceso-Chr2:87624452 dispersed
Ceso Ceso-Chr2:28635132 Ceso4g01838 Ceso-Chr4:33102276 transposed