AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01447 ATGATGATGAGGTTTGAGAGAATATTGAGGGTGGTTGTTGTATTAGTATCATCGATGTTAATAAGGCATGTTATGGGAATTAGATTTGTGATCGACAGAGAAGAGTGTTTGTCTCACAATGTGGAATACGATGGAGATAGAGTTCATGTCTCTTTCGTTGTCATTAAGGCCGAAACCGCTTGGCAATTCTCCCAAGACGGTCTTGATCTTCAGATAACAGGCCCATCCCGAGAGATTGTATACACCGTACATGATAAAACGAGCGACAAGCACGAGTTTCATGCTCAAAAGAAAGGTCTATACCATTTTTGCCTCACAAACAAGTCCCCGTATCACGAGACCATAGACTTCGATGTTTATGTTGGTCATTTTGCATACTATGATCAACACGCAAAGGACGGTTTTGATGTTGTGGGTCCCATTGATTTGGTTTATGCAGAGCATTTCAAGCCATTGTTCGATCAAATAGCAAAATTGGAGGAAGCCCTTTATAACATTCAGTTTGAACAACATTGGTTACAGGCTGAAAATGATCGCCAGGCAGTCATAAATGAGAAAATGGGAAGGAGAGCAGTCCACAAGGCGCTATTCGAATCAGCAGCACTGATCGGGGCTAGCGTCCTGCAGGTTTATCTTCTGCAACGCCTTTTTGAGCGAAAGCTCGGGACCTCGAGAGTTTAA 681 42.88 MMMRFERILRVVVVLVSSMLIRHVMGIRFVIDREECLSHNVEYDGDRVHVSFVVIKAETAWQFSQDGLDLQITGPSREIVYTVHDKTSDKHEFHAQKKGLYHFCLTNKSPYHETIDFDVYVGHFAYYDQHAKDGFDVVGPIDLVYAEHFKPLFDQIAKLEEALYNIQFEQHWLQAENDRQAVINEKMGRRAVHKALFESAALIGASVLQVYLLQRLFERKLGTSRV 226
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01447 226 ProSiteProfiles GOLD domain profile. 34 121 IPR009038 -
Ceso2g01447 226 Pfam emp24-gp25L-p24 family-GOLD 33 218 IPR009038 -
Ceso2g01447 226 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 11 218 IPR015720 GO:0005783(PANTHER)|GO:0005793(PANTHER)|GO:0005794(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0007030(PANTHER)|GO:0030134(PANTHER)
Ceso2g01447 226 SMART EMP24-GP25L-2 26 218 IPR009038 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01447 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:29994162 Ceso4g01648 Ceso-Chr4:29278678 dispersed