AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01451 ATGTCAACCACCACCACCTCGTCTTCTTCGTCAGGCGACGGAGGAGACGGTGGCAATGGCGGTGGTGCCGGAGAGTTCGAAGAACCGTCGCATTCTCGCCAACGATTCAACACCGCCGTCTGGCCGGAGCCTTTCCTTGAAGCTCTCGCTACTCAGATCGCCATTGACGCCGCTCTCTCCTTCGGCCGCCTTGCCGCTGCTCCAGCTCTCTCCAATCTCTTCCAGGTATCAAAATCACACATCCTTATTATCATTTCAAATCGCTTATATACTTTTCACTGTATTATTATGTGCATATTTCACTCTGATTTCGCGTTTAGATTATATCAGTGTAATAATATTTTATTGCAATTTAAGAAAAAGAACTCTCCCACTGTCCCACTTAGATGTCACATAAATTGCGGAAAAGATCCTAAAAGTAGGAAAGTTTGTAGAACTTGGAGAACTGTATCCCAGTCTGACCTCCTATGGCAAAACCTAACACGACGTATTTGGCATCGCAACCACCTCCTCCATGCCTCTTGGCATGATGAATACATCTACCGCCACCGAACTGCTAGCAACTTCCGTGTGCGGAGGTGTTTGTATAGCACCCTGCACTTCCCTCCGAATGATAACAACGCCAACGATAGCCTCTCTTGCCGTTGCCTTGCACTATCCGATTACCACCTAGCCGCAGGATTCTCTGATGGGTCCGTTCGCCTATTTCACCTCCCCACAAGGCTCCACTTGTCCACCTTCCGCCCCCATCAACGCAATAACCTTGGCCCATTCTCCCGTGCTGTCTGTGGGATCTTTTTTACGGATAATAGGCTAGTTTTTGCCTCCCTTGACGGTGATATTCATGTTGCATCCGTCAATGCTCCAGGAGTTCCACGGAGGGCTCACTTGGGGGACGTGGTCACAGATGGTGTTCTTGTGGATTTCACCGGTTGTAATCAGTGGTGGATCGGCCTTTACGCAGGTGTTCCAAACCGTGCCTTCCATGTGCGAAATGGCAATACAGAAGAACTCGTATTCATTGGTGGGACATTGACCGACCCAGACGCTGTAACGGGTTGGCACCTATTGACGGACCTAAGCGAGCAGGTAGGGCGAATCCGTATAACAAGCGAAGACCTGGCAGTGGCCTTCACAAGCAGCAAGGTCCTTGTATTTGACTTGAGAAGCCAAATGATATTAGGAGAAGAAGAGTTTATGAGGCGTATTAACGTAGGTGCAGCTGATGCGTACGATAAGGCCCTGATGTTCGTAAATAGTAGGGGGGTGGGTAACGTGCGGGAGGTGGGTAGCTTGGAGGAAATATGTAGGTTCATGGCAAGGGGAGGGGTGGTGGGGTGCATGAATGGGGGTTACTGTATCATATGCTGCAGTGGGGGTGGGATTAGGGTTTGGGAGTTGAACCATGGGGAGTATTTGTACAGTTTTAGGGAAAGGGTCGGAGATAGTACGAGTGCGCTGACTGCGGATGAACGGTATGTAGCGGCTTGTACTAGTGACAACACCATTCACCTATGGGACTTTGGAGCACAACCCTTGTAG 1542 49.81 MSTTTTSSSSSGDGGDGGNGGGAGEFEEPSHSRQRFNTAVWPEPFLEALATQIAIDAALSFGRLAAAPALSNLFQVSKSHILIIISNRLYTFHCIIMCIFHSDFAFRLYQCNNILLQFKKKNSPTVPLRCHINCGKDPKSRKVCRTWRTVSQSDLLWQNLTRRIWHRNHLLHASWHDEYIYRHRTASNFRVRRCLYSTLHFPPNDNNANDSLSCRCLALSDYHLAAGFSDGSVRLFHLPTRLHLSTFRPHQRNNLGPFSRAVCGIFFTDNRLVFASLDGDIHVASVNAPGVPRRAHLGDVVTDGVLVDFTGCNQWWIGLYAGVPNRAFHVRNGNTEELVFIGGTLTDPDAVTGWHLLTDLSEQVGRIRITSEDLAVAFTSSKVLVFDLRSQMILGEEEFMRRINVGAADAYDKALMFVNSRGVGNVREVGSLEEICRFMARGGVVGCMNGGYCIICCSGGGIRVWELNHGEYLYSFRERVGDSTSALTADERYVAACTSDNTIHLWDFGAQPL 513
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01451 513 ProSitePatterns Trp-Asp (WD) repeats signature. 494 508 IPR019775 -
Ceso2g01451 513 MobiDBLite consensus disorder prediction 1 15 - -
Ceso2g01451 513 Gene3D - 207 512 IPR015943 GO:0005515(InterPro)
Ceso2g01451 513 PANTHER WD40 REPEAT PROTEIN 12, 37 23 471 - -
Ceso2g01451 513 SUPERFAMILY WD40 repeat-like 209 509 IPR036322 GO:0005515(InterPro)
Ceso2g01451 513 MobiDBLite consensus disorder prediction 1 29 - -
Ceso2g01451 513 SUPERFAMILY F-box domain 141 506 IPR036047 GO:0005515(InterPro)
Ceso2g01451 513 Gene3D - 133 191 - -
Ceso2g01451 513 SMART WD40-4 192 237 IPR001680 GO:0005515(InterPro)
Ceso2g01451 513 SMART WD40-4 240 285 IPR001680 GO:0005515(InterPro)
Ceso2g01451 513 SMART WD40-4 469 507 IPR001680 GO:0005515(InterPro)
Ceso2g01451 513 SMART WD40-4 431 466 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01451 - -
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ceso None None None TF SAP