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AGRP

Asteraceae Genomic Research Platform

AGRP Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01490 ATGGGAGGGTTTGAGGAAAATAAGGAAGTAGGAGAGAAGAAGAGTGGGTTTGAAGAGAATAATGGGGTTGAAAAAGAAAGTATGAAAAGAGTTGGGAGTGAATCATCTTTTTGTGAAACTGAAGATGAAGAACAAGAAGAAGAAGAAGAAGAAGATAAACAAATTGAATTGGGTCCTCAATGCACCCTCAAGGAACAAATTGAAAAGGATAAGGATGATGAGAGCCTGAGAAAATGGAAAGAACAACTTCTTGGAAATGTTGATATTAATAATGTTGGAGAATCTTTGGAACCAGAAGTGAAGATCCTTTTTCTTTCAATCCTATCTCCAGGGAGATCTGAGATTGTTCTTCCGATACCTGAAGATGGAAAACCTAAAGGCCCGTGGTTTACGTTAAAAGAAGGTTGTCGTTATAGCCTCAGATTCTCCTTTCAAGTCACCCATAACATTGTTTCAGGTTTAAAGTACACCAACAACGTGTGGAAAACCGGTGTCAAGGTGGATAGAACGAAACAGATGCTTGGTACTTTTAGTCCCCAACAAGAAGCATACACTTATGACATGCCTGAAGAGACTACCCCTTCCGGATATTTTGCAAGAGGCTCTTATTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAGTGTTACTTGGAGATCAACTATACGTTTGAGATCCGGAAAGATTGGGCAAGCGTTTAA 702 39.03 MGGFEENKEVGEKKSGFEENNGVEKESMKRVGSESSFCETEDEEQEEEEEEDKQIELGPQCTLKEQIEKDKDDESLRKWKEQLLGNVDINNVGESLEPEVKILFLSILSPGRSEIVLPIPEDGKPKGPWFTLKEGCRYSLRFSFQVTHNIVSGLKYTNNVWKTGVKVDRTKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYTFEIRKDWASV 233
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01490 233 MobiDBLite consensus disorder prediction 1 69 - -
Ceso2g01490 233 MobiDBLite consensus disorder prediction 1 37 - -
Ceso2g01490 233 Gene3D Coagulation Factor XIII, subunit A, domain 1 52 232 IPR024792 -
Ceso2g01490 233 MobiDBLite consensus disorder prediction 55 69 - -
Ceso2g01490 233 PRINTS RHO protein GDP dissociation inhibitor signature 150 166 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Ceso2g01490 233 PRINTS RHO protein GDP dissociation inhibitor signature 167 182 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Ceso2g01490 233 PRINTS RHO protein GDP dissociation inhibitor signature 209 226 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Ceso2g01490 233 PRINTS RHO protein GDP dissociation inhibitor signature 183 195 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Ceso2g01490 233 SUPERFAMILY E set domains 40 230 IPR014756 -
Ceso2g01490 233 MobiDBLite consensus disorder prediction 38 54 - -
Ceso2g01490 233 FunFam Rho GDP-dissociation inhibitor 1 53 232 - -
Ceso2g01490 233 Pfam RHO protein GDP dissociation inhibitor 41 229 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Ceso2g01490 233 PANTHER RHO GDP-DISSOCIATION INHIBITOR 39 230 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01490 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
40247 Ceso2g01490 Ceso4g01720
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:31538268 Ceso4g01389 Ceso-Chr4:23521964 dispersed
Ceso Ceso-Chr2:31538268 Ceso4g01720 Ceso-Chr4:30704994 wgd