AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ceso2g01516 | ATGGGGCTTCTAATTGTTGTTGCTTTCCTCTTCATGCAAATCTACGCCATCACCGGAGCTAAGATCCCGGCCGTGATCGTGTTCGGCGACTCCTCCGTGGATGCCGGCAACAACAACCAAATCCAAACCGTATTGAAGAGCAATTTCAAGCCATACGGCCGTGATTTCTTCGGTGGAAAGGCTACCGGAAGATTCTCCAATGGACGCGTTCCGCCTGATTTTATATCGGAATCCTACGGTTTGCGACCTTATGTGCCCGCGTACTTGGATCCCGCGTATAACATATCGGATTTTGCTACGGGTGTCTGTTTTGCGTCTGCTGGGACCGGTTACGACAATGCTACATCTTCGGTCCTTTCAGTGATACCTCTATGGAAGGAGGTAGAATACTATAAGGAGTACCAAAAGAAACTAAGAGGCTATTTGGGTGATGAAAAGGCCAATAATGTTCTATCCGAAGCAGTTTACCTTATAAGCATGGGCACAAATGATTTCCTTGAGAACTACTACACACTTCCGAGTAGAAAATCTCAATACAACATTAACCAGTATCAAGATTTTCTTGGCGGCATTGCCGAGGGCTTCATCAAGGAGCTCTACAGCCTTGGAGCACGTAAGATTTCACTCGGAGGGCTTCCTCCGATGGGTTGTTTGCCATTGGAGCGAACAACGCGTTTCATGAATGGGAAAGGCGATACATGCAATGACGAATATAACAAGGTGGCGTTGGCCTTTAATGGAAAGTTGTACGGTATGGTTAAGAGGTTGAATGGCGAGCTTTCGGGGAGCAGAATCGTCTTTACTAATCCGTATGCCGTTTTCCAACAAATTGTCCGAAAACCTTCCATTTTCGGATTTGAGACAGCGGCAGTAGCATGTTGTTCAACAGGATTGTTCGAGATGGGATATATGTGTGATCAATTCAATCCGTTCACCTGTTCAGATGCCAATAGATACGTCTTTTGGGACTCTTTTCATCCTTCCGAAAAAACCAACCGTATTATATCTGATCACTTGTTCAAAACCACTCTTTCTAAGTTTTTATCGTAG | 1050 | 45.14 | MGLLIVVAFLFMQIYAITGAKIPAVIVFGDSSVDAGNNNQIQTVLKSNFKPYGRDFFGGKATGRFSNGRVPPDFISESYGLRPYVPAYLDPAYNISDFATGVCFASAGTGYDNATSSVLSVIPLWKEVEYYKEYQKKLRGYLGDEKANNVLSEAVYLISMGTNDFLENYYTLPSRKSQYNINQYQDFLGGIAEGFIKELYSLGARKISLGGLPPMGCLPLERTTRFMNGKGDTCNDEYNKVALAFNGKLYGMVKRLNGELSGSRIVFTNPYAVFQQIVRKPSIFGFETAAVACCSTGLFEMGYMCDQFNPFTCSDANRYVFWDSFHPSEKTNRIISDHLFKTTLSKFLS | 349 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ceso2g01516 | 349 | Gene3D | SGNH hydrolase | 15 | 345 | IPR036514 | - | |
| Ceso2g01516 | 349 | PANTHER | GDSL ESTERASE-LIPASE EXL3 | 13 | 339 | IPR050592 | - | |
| Ceso2g01516 | 349 | Pfam | GDSL-like Lipase-Acylhydrolase | 25 | 339 | IPR001087 | GO:0016788(InterPro) | |
| Ceso2g01516 | 349 | CDD | SGNH-plant-lipase-like | 23 | 340 | IPR035669 | - | |
| Ceso2g01516 | 349 | FunFam | GDSL esterase-lipase APG | 16 | 344 | - | - | |
| Ceso2g01516 | 349 | SUPERFAMILY | SGNH hydrolase | 142 | 343 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ceso2g01516 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ceso | Ceso-Chr1:60114155 | Ceso2g01516 | Ceso-Chr2:32224414 | dispersed | |
| Ceso | Ceso-Chr2:32224414 | Ceso4g01402 | Ceso-Chr4:23770386 | dispersed | |
| Ceso | Ceso-Chr2:32224414 | Ceso7g02739 | Ceso-Chr7:54691305 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| CesoJARYMX010000072g00008 | . | 2 | 90 | Pollen Coat Proteome gene family | AT1G75930 | 39.326 | 2.61e-10 | 56.2 | |
| Ceso7g02710 | . | 23 | 291 | Pollen Coat Proteome gene family | AT1G75910 | 39.483 | 1.51e-59 | 192.0 | |
| Ceso7g02719 | . | 30 | 338 | Pollen Coat Proteome gene family | AT1G75910 | 34.906 | 1.19e-63 | 203.0 | |
| Ceso7g02716 | . | 23 | 338 | Pollen Coat Proteome gene family | AT1G75910 | 36.0 | 1.33e-66 | 213.0 | |
| Ceso7g02708 | . | 23 | 290 | Pollen Coat Proteome gene family | AT1G75910 | 36.567 | 1.79e-50 | 169.0 | |
| Ceso7g02721 | . | 80 | 335 | Pollen Coat Proteome gene family | AT1G75910 | 33.585 | 9.04e-46 | 157.0 | |
| Ceso7g02739 | . | 89 | 335 | Pollen Coat Proteome gene family | AT1G75910 | 33.333 | 3.22e-44 | 150.0 | |
| Ceso7g02744 | . | 23 | 174 | Pollen Coat Proteome gene family | AT1G75910 | 46.711 | 1.83e-39 | 136.0 | |
| Ceso6g03070 | . | 27 | 342 | Pollen Coat Proteome gene family | AT1G75910 | 40.062 | 1.29e-70 | 223.0 | |
| Ceso4g01402 | . | 9 | 336 | Pollen Coat Proteome gene family | AT1G75910 | 34.604 | 3.03e-62 | 200.0 | |
| Ceso4g04236 | . | 40 | 262 | Pollen Coat Proteome gene family | AT4G20670 | 25.541 | 7.85e-15 | 71.6 | |
| Ceso4g04188 | . | 53 | 332 | Pollen Coat Proteome gene family | AT1G75930 | 30.743 | 6.80e-35 | 131.0 | |
| Ceso4g04239 | . | 34 | 262 | Pollen Coat Proteome gene family | AT4G20670 | 23.305 | 7.79e-13 | 66.2 | |
| Ceso4g04240 | . | 40 | 262 | Pollen Coat Proteome gene family | AT4G20670 | 25.217 | 6.95e-14 | 68.6 | |
| Ceso4g04483 | . | 26 | 337 | Pollen Coat Proteome gene family | AT1G75910 | 26.269 | 6.85e-22 | 94.0 | |
| Ceso3g03352 | . | 6 | 342 | Pollen Coat Proteome gene family | AT1G75930 | 31.319 | 9.33e-41 | 144.0 | |
| Ceso3g03354 | . | 10 | 231 | Pollen Coat Proteome gene family | AT1G75930 | 28.319 | 1.37e-16 | 76.6 | |
| Ceso2g01516 | . | 8 | 336 | Pollen Coat Proteome gene family | AT1G75910 | 37.135 | 1.61e-67 | 214.0 | |
| Ceso2g03768 | . | 28 | 340 | Pollen Coat Proteome gene family | AT1G75910 | 36.196 | 3.52e-60 | 196.0 | |
| Ceso1g01177 | . | 19 | 342 | Pollen Coat Proteome gene family | AT1G75910 | 37.015 | 2.02e-70 | 221.0 | |
| Ceso1g01978 | . | 5 | 343 | Pollen Coat Proteome gene family | AT1G75910 | 39.266 | 4.47e-72 | 226.0 | |
| Ceso1g01977 | . | 20 | 342 | Pollen Coat Proteome gene family | AT1G75930 | 35.329 | 4.44e-57 | 187.0 | |
| Ceso1g01887 | . | 21 | 343 | Pollen Coat Proteome gene family | AT1G75930 | 38.024 | 3.04e-61 | 198.0 | |
| Ceso1g02452 | . | 16 | 343 | Pollen Coat Proteome gene family | AT1G75910 | 35.465 | 5.73e-63 | 203.0 | |
| Ceso1g02453 | . | 7 | 327 | Pollen Coat Proteome gene family | AT1G75910 | 37.243 | 2.32e-62 | 201.0 | |
| Ceso1g04034 | . | 4 | 326 | Pollen Coat Proteome gene family | AT1G75930 | 28.783 | 5.73e-28 | 114.0 | |
| Ceso1g04429 | . | 7 | 337 | Pollen Coat Proteome gene family | AT1G75930 | 34.493 | 5.85e-61 | 197.0 |