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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01537 ATGAATGCTTACAAGGCTTACAAAGCATGTGCCCCAATAGCATGGAGTCCCAACATATACATAACCCTGGTGAGGGGAATTCCAGGGACCAGGAAACTTCACAGGCGCACCTTAGAAGCATTGCGTTTGGGGAAGTGCAATCGAACTGTCATGCGATGGAATACTCCTACCGTCAGAGGAATGCTTCAACAGGTTAAAAGATTGGTTGTAATCGAGACTGAAGAAATGTTCAAGGCACGTAAAGAAAAGGAAGCAAAACACCGAGCATGTCGTCCACCTTTGGTTGTGAGCCACCTCCCTGCTCCTGCAAGTGATTCGTCTCAACAGGCTGCATAA 336 47.32 MNAYKAYKACAPIAWSPNIYITLVRGIPGTRKLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMFKARKEKEAKHRACRPPLVVSHLPAPASDSSQQAA 111
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01537 111 Gene3D - 17 78 IPR036919 -
Ceso2g01537 111 NCBIfam 50S ribosomal protein L30 19 72 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Ceso2g01537 111 FunFam 50S ribosomal protein L30 17 98 - -
Ceso2g01537 111 Pfam Ribosomal protein L30p-L7e 20 69 IPR016082 -
Ceso2g01537 111 SUPERFAMILY Ribosomal protein L30p-L7e 18 72 IPR036919 -
Ceso2g01537 111 CDD Ribosomal-L30 19 72 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Ceso2g01537 111 Hamap Large ribosomal subunit protein uL30 [rpmD]. 16 73 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Ceso2g01537 111 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L30 1 107 IPR005996 GO:0003735(InterPro)|GO:0005739(PANTHER)|GO:0006412(InterPro)|GO:0015934(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01537 K02907 large subunit ribosomal protein L30