AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01538 ATGGAAGAAGAACACACACCTGCAACCAATCTCGCCGCCGGCGACCACCACCACCACCCTCACTCCGACCTGATCACAGCATTCTCAGAGATAACCTCAGCTTCCAAAGAAGAAGCCACCTTCTTCCTCGAATCACACAATTTCGATCTCGATTCCGCCGTCTCCACCTTCTTCGAGACCACCGCCACCGCCGAAGAAGACGACGCTCCTCCTCCTCCACCTCGCCGGAACCCTAACCCTAACCCTTCCGATACTCATTCCCCCTCCTCTTCCCCGTCGCGATCTCGATCAGCATCTCCACCGCCTTCTCTCGGATTACAACAACAACAAGTGGCCGGTGGTAATCCTTATAATCTGCGATCTAGGAATACCGATAAGAAGCCTTCCGGTAGTCGGTCCACTGGACGGATACGGACTTTTGCAGATCTGAATCGACCCGGTGATGACTCCGGAAGCGATTCGGATGAGCCTCAGGAGTATTATACCGGTGGTGAAAAGAGCGGAATGCTCGTCCAGGATCCATCAAAGGTGAATGATGTGGAATCATTGTTTAACCAAGCTAGACGGGCAGGAGCAGAAGAAGGGACTCTTGATCAACTCCAACCATCTTCAAGCTCCAGAAGCTTTGCTGGAAGAGGAAGGCTACTATCTGGAGAGACAACATCAGCTGCTCCTCAGCAGGCTGAACCTGAAGTCCACACACACACCATCACTTTCTGGACTAATGGTTTTACCGTAGATGATGGTCCTTTGAGGAGGCTGGATGATCCTCAAAATGCATCTTTCTTGGAGAGCATAAGAAAGTCGGAATGTCCAGAAGAACTTAGGCCTGCAAAAGAAAGAGCTCCGGTCCATGTTAGTCTTGTGAGGAAGTTGGAGGACTACCCTGTCCAAAAACAACGGCGTGCGGCCTTTGTGGGTGTGGGTAGAACCCTAGGCACCACCGCCTCTTCTGAGGACACGGCTTCCGCCACCCCAGTCCCGGCCACTACCACTACCGCTGCTCCACCCCCATCCTTAGGCCTCATTGTGGATGACACATTGCCTTCCACCTCTATTCAACTGCGATTGGTCGATGGGACCCGTATGGTTTCACGCTTCAATTTCCATCACACGATCAGTGATATACGGTCTTTCATTGATGCATCAAGGCCTGGAGGGCCGCGTGCTTATCAGCTGCTGACGATGGGGTTTCCTCCGAAGCAGCTCAACGATTTGAAGCAGACGATTGAAGAGGCGGGGCTAGCGAATTCGGTGGTCATACAGAAACTCTAA 1275 52.39 MEEEHTPATNLAAGDHHHHPHSDLITAFSEITSASKEEATFFLESHNFDLDSAVSTFFETTATAEEDDAPPPPPRRNPNPNPSDTHSPSSSPSRSRSASPPPSLGLQQQQVAGGNPYNLRSRNTDKKPSGSRSTGRIRTFADLNRPGDDSGSDSDEPQEYYTGGEKSGMLVQDPSKVNDVESLFNQARRAGAEEGTLDQLQPSSSSRSFAGRGRLLSGETTSAAPQQAEPEVHTHTITFWTNGFTVDDGPLRRLDDPQNASFLESIRKSECPEELRPAKERAPVHVSLVRKLEDYPVQKQRRAAFVGVGRTLGTTASSEDTASATPVPATTTTAAPPPSLGLIVDDTLPSTSIQLRLVDGTRMVSRFNFHHTISDIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLKQTIEEAGLANSVVIQKL 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01538 424 FunFam Plant UBX domain-containing protein 4 297 424 - -
Ceso2g01538 424 Pfam SEP domain 237 310 IPR012989 -
Ceso2g01538 424 CDD UBA-CF106 21 59 IPR039517 -
Ceso2g01538 424 FunFam Plant UBX domain-containing protein 4 232 294 - -
Ceso2g01538 424 ProSiteProfiles UBX domain profile. 346 423 IPR001012 GO:0005515(InterPro)
Ceso2g01538 424 CDD UBX-UBXN2 352 423 - -
Ceso2g01538 424 SUPERFAMILY Ubiquitin-like 305 422 IPR029071 -
Ceso2g01538 424 MobiDBLite consensus disorder prediction 197 211 - -
Ceso2g01538 424 MobiDBLite consensus disorder prediction 315 338 - -
Ceso2g01538 424 SMART ubx-3 345 424 IPR001012 GO:0005515(InterPro)
Ceso2g01538 424 MobiDBLite consensus disorder prediction 1 24 - -
Ceso2g01538 424 ProSiteProfiles SEP domain profile. 232 296 IPR012989 -
Ceso2g01538 424 Pfam UBX domain 349 423 IPR001012 GO:0005515(InterPro)
Ceso2g01538 424 Gene3D SEP domain 232 294 IPR036241 -
Ceso2g01538 424 Gene3D - 297 424 - -
Ceso2g01538 424 MobiDBLite consensus disorder prediction 315 337 - -
Ceso2g01538 424 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 228 317 IPR036241 -
Ceso2g01538 424 Pfam UBA-like domain 23 60 - -
Ceso2g01538 424 MobiDBLite consensus disorder prediction 82 124 - -
Ceso2g01538 424 Gene3D - 20 60 - -
Ceso2g01538 424 SMART faf-3 229 322 IPR012989 -
Ceso2g01538 424 MobiDBLite consensus disorder prediction 57 212 - -
Ceso2g01538 424 PANTHER UBX DOMAIN CONTAINING PROTEIN 21 423 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Ceso2g01538 424 SUPERFAMILY UBA-like 20 60 IPR009060 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01538 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:69963470 Ceso2g01538 Ceso-Chr2:32671854 dispersed