AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01539 ATGATTAAGCAAATACTTAATAAGCTTCCTAGGAAGCCATCTTCCAAATCATCACACAATGATGAAGGAAACAATGCTATGGATTCCGCTTCGATAAATTCGAGCGGTGTAGGTGTTAATAATGGCGGTTCTAAGAGCAATTCGGCTAAATCGAATAACGAAACTAGTAAGAAGTTAGGTTCTATTGGGGGGAATCAAGTGGTGCAGGTATTGAATATGAATCATGCTTCTTATGAAGCATTGCCGAGTTTTCGAGTTGTATCTAGCTCGGAAAAACACGGCTTGTTCATTAAGAAGTTGAACATGTGTTGTGTGGTGTTCGATTTTAGCGATCCGTCTAAGGATTCGAAGGAAAAAGATGTTAAGAAACAGACCTTGCTCGAGCTCGTGGATTATGTTTCCTCGGCCACCTCGAAATTCAATGAGGTGACGATGCAGGAAATGGCGAAAATGGTGGCTGCTAACTTGTTTCGTGCTTTGCCGAATGCTAACCATGATAACAAGCTGCCGGATTTATACGATCAAGAAGATGATGAGTTTAGTATGGATCCATCGTGGCCGCATCTTCAAGTCGTCTATGAGTTCCTTCTTAGGTTTGTAGCTTCATCGGAAACCGATGCTAAACTTGCCAAAAGATACATCGATCATGCTTTCGTGTTGAAATTGCTCGATCTCTTTGATTCCGAGGATCAGAGGGAAAGGGAGTATCTGAAGACGATCTTGCATCGTGTGTATGGGAAGTTCATGGTTCATCGGCCGTTCATCAGGAAAGCGATCAACAATATCTTTTATCTGTTCATTTTCGAGACCGGGAAGCACAATGGGATAGGGGAATTGCTCGAGATTTTGGGTAGTATAATTAACGGGTTTGCTTTGCCTTTGAAGGAAGAACATAAGCAGTTTCTTGTTCATGCTTTGATCCCGCTTCATAAGCCGAGATGTTTGTCGACGTACCATCAGCAGCTCTTGTATTGCGTTGGTCAGTTTGTCGAGAAAGATTTTAGGTTGGCGGATACCGTGATTAGGGGATTGCTTAAGTATTGGCCCGTGACTAATAGCTCGAAAGAGGTGATGTATCTTAGTGAATTGGAGGAGATTCTTGAAGCTACACAGGCTGCGGAATTCGAACGGTGCATGGTCCCGTTGTTCCGTCAGATCGGCTACTGCCTCAATAGTTCACACTTCCAGGTGGCAGAACGTGCGTTATTCCTATGGAATAACGAGCATATAAGGAATCTAGTAATTCAAAACCGCAAAGTGATCCTGCCCATTATCTTCGCACCTTTGGAGAAGAACACACGAGGCCACTGGAACCAAGCCGTTCAAAGCCTAACGTTTAACGTTCGCAAGATGTTTTCAGACGCTGATGAATCGCTATTTCAAGAGTGCCTGGTGAAGTACCAACAAGATGAAGCCAAGGAGAAGGAAAGCCTCGCTAAGCGGCAGTTAACCTGGAGCCGCCTGGATACCATAGCTGCCGCTAAAGCCTTGAGCATCGAGTCTGTGGTCATCTCAAGCTTCGCCTCCTCTGTCACCATCTCCGCCACCACCACCGCTATTTCATGA 1566 44.7 MIKQILNKLPRKPSSKSSHNDEGNNAMDSASINSSGVGVNNGGSKSNSAKSNNETSKKLGSIGGNQVVQVLNMNHASYEALPSFRVVSSSEKHGLFIKKLNMCCVVFDFSDPSKDSKEKDVKKQTLLELVDYVSSATSKFNEVTMQEMAKMVAANLFRALPNANHDNKLPDLYDQEDDEFSMDPSWPHLQVVYEFLLRFVASSETDAKLAKRYIDHAFVLKLLDLFDSEDQREREYLKTILHRVYGKFMVHRPFIRKAINNIFYLFIFETGKHNGIGELLEILGSIINGFALPLKEEHKQFLVHALIPLHKPRCLSTYHQQLLYCVGQFVEKDFRLADTVIRGLLKYWPVTNSSKEVMYLSELEEILEATQAAEFERCMVPLFRQIGYCLNSSHFQVAERALFLWNNEHIRNLVIQNRKVILPIIFAPLEKNTRGHWNQAVQSLTFNVRKMFSDADESLFQECLVKYQQDEAKEKESLAKRQLTWSRLDTIAAAKALSIESVVISSFASSVTISATTTAIS 521
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01539 521 Gene3D - 89 490 IPR011989 -
Ceso2g01539 521 SUPERFAMILY ARM repeat 94 475 IPR016024 -
Ceso2g01539 521 MobiDBLite consensus disorder prediction 19 60 - -
Ceso2g01539 521 PIRSF PP2A-B56 2 519 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Ceso2g01539 521 MobiDBLite consensus disorder prediction 1 60 - -
Ceso2g01539 521 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 81 492 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Ceso2g01539 521 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 496 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Ceso2g01539 521 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 88 491 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01539 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
40253 Ceso2g01539 Ceso4g01758
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:32690044 Ceso4g01758 Ceso-Chr4:31338924 dispersed
Ceso Ceso-Chr2:32690044 Ceso4g01765 Ceso-Chr4:31455299 wgd