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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01540 ATGACTGATAAGTTTTTAACAGCCATTAAAGCCAAAATTAAGGTGATGAGATTACCAGAAGAGAATAAATCATCAGCAAGTATTGAGGAGATGGAGAAGATTATAGGGTATAAGTTCAAGAAGAAGATTCTATTGCAACAGGCCTTTACACATCCGAGTTTTCATGGCTCTGAATCCTATGAAAGACTCGAGTATGTTGGCGACTCCATTCTCAATTTTCTAATCAGTAAACAGCAATTCTTCATGTATCCGGATCTCCCACCAGGGTCGTTGACTGCCCTCCGAGCTGCAAATGTTGATACGGAGAAGCTAGCACGTGTAGCGGTTAAATATAACTTCCATAAGTACATACGCCATGAAAATCCGACGCTTAGTAAGCAAATTCGAGTATTTACGAGAGCTCTTGGAAAGTATCCTCTTCATTCATATGGATTAATTGATGCTCCAAAGACTTTAGCTGATATCGTTGAATCCACACTAGGGGCCATCTACGTTGACAGCAATTCCTCAATCGATGCTACATGGGAGGTGGCTAAGATTCTACTCGAGCCCATGATCACTCCCGAAATGCTCCAAAAGAACCCCGTGAGAAAGCTCAATGAACTGTGCCACAAAAAGAAACTGAAGGTACGATTCAGAGATAAATGGTTAAAAGAAGGCGTGTACGAAGTTTTTATTGATAATAAACTTAGAGGAAGAGGTGAATATCAAGCCAAGAAGGAAATCGCGTTGAACAGAGCAGCCGAGGATGCATGTAACAACATCATCAACGGCCGTGATGAACATTGA 789 41.19 MTDKFLTAIKAKIKVMRLPEENKSSASIEEMEKIIGYKFKKKILLQQAFTHPSFHGSESYERLEYVGDSILNFLISKQQFFMYPDLPPGSLTALRAANVDTEKLARVAVKYNFHKYIRHENPTLSKQIRVFTRALGKYPLHSYGLIDAPKTLADIVESTLGAIYVDSNSSIDATWEVAKILLEPMITPEMLQKNPVRKLNELCHKKKLKVRFRDKWLKEGVYEVFIDNKLRGRGEYQAKKEIALNRAAEDACNNIINGRDEH 262
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01540 262 Pfam Double-stranded RNA binding motif 195 254 IPR014720 -
Ceso2g01540 262 Pfam Ribonuclease III domain 61 167 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ceso2g01540 262 SUPERFAMILY RNase III domain-like 27 188 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ceso2g01540 262 CDD RIBOc 44 191 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ceso2g01540 262 PANTHER DICER-RELATED 5 256 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Ceso2g01540 262 SUPERFAMILY dsRNA-binding domain-like 150 255 - -
Ceso2g01540 262 SMART riboneu5 43 191 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ceso2g01540 262 FunFam Endoribonuclease dicer-like 1 22 189 - -
Ceso2g01540 262 Gene3D Ribonuclease III domain 19 190 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ceso2g01540 262 ProSitePatterns Ribonuclease III family signature. 61 69 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ceso2g01540 262 Gene3D - 191 262 - -
Ceso2g01540 262 ProSiteProfiles Ribonuclease III family domain profile. 28 168 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01540 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:32716844 Ceso2g03309 Ceso-Chr2:82827603 dispersed
Ceso Ceso-Chr2:32716844 Ceso2g01541 Ceso-Chr2:32723985 tandem