AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01542 ATGGATTTTGAATTGAGAAGAGCGAGAGAGAAATTAGAGAAAGAGCAAAAGGATAGAAAAGAGAAGGCTAAGTTGAGATTGGAAAGAGAGAGAAAAGCCAAACAAGAAGCTCTTCGTCACCGTGAGGCCATCGAGGCTGCTCAACGATCTCGTAGGATCGATGCCATGGAAGCCCAACTTAAGGCAGAGCAGCAGATGGAAGAAAATATACTTGCTGGAAGAGGGGTTTCCTTTTATCGTGCTCTAGAAGCTGCGCCTTTTGAGGGTTCTGGAGATAAGATCAAACTTCCGCCTTCCTGTTTCACTGAGTTATCCGAACAAGGTGCCTTCGACAAGGGTCCTCTCCATTTCCAGTTGTCGGTGGTTCGCGAAAATGGATCTTCTTCGGCTGCCGAAAGTGTAGGCCACGGGTCGACCCATGCTGGCGTCTTGGAGTTCACCGCAGAAGAAGGTTCTGTCGGGATCCCTCCTCACATTTGGAACAACTTATACTCGAAACAAGATCCCAAAACTCCGTTAGTCGAAGTACGATACGTGTGGCTGGCAAAAGGAACGTACGCAAAGCTCCAGTCGGAAGAGCTCGGGTTCTCGGACATACCCAACCACAAAGCCGTCCTTGAAACAACCCTTCGCCAGCACGCAACTCTTTCTCAAGACGATGTTTTGACGGTCAAACACGGTGTATTGACTTACCATTTGCGCGTTCTTGAGCTGAAACCGTCGCCAAGCGTATCCGTTCTCGAAACAGATATCGAAGTTGACATCGTGGGTCCTGATTCACTTCCCGAAAGAAGCAACCAGCACGTGCTGAAACCACTAACCTTCGGGAAACCCGAATCGGGAGTTGTAAACGAAAAAGAGTACATTTATTACAAGTTCTCAGTAGATAACGAGACATGGGGAAGAATTTCTTCTGGGGATGCTGAAATTGAAGTAAAACTCGATTCTGAGGCAAAGGATGGAGATACCGATCTCTATCTTTCACAACACCCGCTCTTGTTTCCAAACACCCATCAGCATGGTTGGTCTTCTCATGATATGGGTTCGAAATCTTTGGTTCTTGGCTCCAAAGACCACAGTTTTGGTGCTGGCACTTATAGTGTCGGTGTATATGGGTTCAAAGGAACCACAAAGTATCACGTTTTGGTAACTTTGCAAGATTCTTCTAACATGAAAATGGATCAACAACCTGTGTCATCTTCTTCTTCACAAGGGTCATCAGCAGATACTGTAGAGTGCAGCAATTGCAAGCATTATATACCGTTGAGAACGATAGCACTTCATGAGGCTTACTGTAGAAGACATAATGTCATCTGTCAGCATGCTGGTTGTGGTATCGTTCTCAGGATCGAAGAGGCCAAGAACCATGTGCATTGCGATAAATGTGGACTAGCGTTTCATAGTGACGAGATAGGAAAACATATGAAAGTGTTCCACGAGCCGCTCTGCTGTCCGTGTGGCGCTGTTCTTGAGAAAACACAGATGGTAAGTGACTATGTTTTATTATCTCCTCGTTTGAATGCTTTAAAGAAAACTTCTTTGGGGTTGTTGAGTTCACTCGGGCTGCATTTGGTGCAACACCAGAACTCGGATTGCCCGTTACGTCTTGTTACATGTCGGTTTTGTGGGGACATGGTGGAAGCCGGGTCGTTGGCTGTGGACGCACGTGATCGGTTGAGAGGACTCTCGCAGCACGAAAGTCTTTGTGGGTCAAGAACTGCGCCTTGCGACTCTTGCGGTCGGGCAGTCATGTTGAAAGAAATGGAAATTCATCAAATAGCTGTTCACCAGAAGAACTGA 1800 46.61 MDFELRRAREKLEKEQKDRKEKAKLRLERERKAKQEALRHREAIEAAQRSRRIDAMEAQLKAEQQMEENILAGRGVSFYRALEAAPFEGSGDKIKLPPSCFTELSEQGAFDKGPLHFQLSVVRENGSSSAAESVGHGSTHAGVLEFTAEEGSVGIPPHIWNNLYSKQDPKTPLVEVRYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTYHLRVLELKPSPSVSVLETDIEVDIVGPDSLPERSNQHVLKPLTFGKPESGVVNEKEYIYYKFSVDNETWGRISSGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKSLVLGSKDHSFGAGTYSVGVYGFKGTTKYHVLVTLQDSSNMKMDQQPVSSSSSQGSSADTVECSNCKHYIPLRTIALHEAYCRRHNVICQHAGCGIVLRIEEAKNHVHCDKCGLAFHSDEIGKHMKVFHEPLCCPCGAVLEKTQMVSDYVLLSPRLNALKKTSLGLLSSLGLHLVQHQNSDCPLRLVTCRFCGDMVEAGSLAVDARDRLRGLSQHESLCGSRTAPCDSCGRAVMLKEMEIHQIAVHQKN 599
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01542 599 Gene3D - 279 392 - -
Ceso2g01542 599 Gene3D - 183 256 - -
Ceso2g01542 599 Pfam Ubiquitin fusion degradation protein UFD1 90 258 IPR004854 GO:0006511(InterPro)
Ceso2g01542 599 Coils Coil 5 66 - -
Ceso2g01542 599 Pfam TRAFD1-XAF1, zinc finger 562 591 IPR049439 -
Ceso2g01542 599 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 527 597 IPR013083 -
Ceso2g01542 599 Gene3D - 63 181 IPR042299 -
Ceso2g01542 599 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 570 IPR004854 GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER)
Ceso2g01542 599 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01542 K14016 ubiquitin fusion degradation protein 1