AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01543 ATGGCTTCGAGTTCCGAAATTGGGCTTGCTGCAGCCATAAATATCCTCACTGCATTTGCATTTTTGGTTGCATTTGCGATACTTCGGATTCAGCCTTTTAACGATAGGGTGTATTTTCCGAAATGGTATCTAAAGGGGTTAAGGAGCAACCCACTTCAAGCAGGGGCATTTGTGCAAAAGTTTGTCAACTTAGATTTCAGGTCATACTTGAGATTTCTGAACTGGATGCCTGCTGCACTTCACATGCCAGAGCCTGAGCTTATTGATCATGCTGGATTAGACTCTGTTGTTTACTTGAGAATCTACTTAACAGGACTCAAAATTTTTGTTCCCATCGCATGCCTTGCTTTCTCAGTCATGGTGCCCGTCAATTGGACTAATCGGACTTTGGAGGAGTCTAAATTAACATTCACTGACATAGACAAGCTATCAATATCCAACATTCCAACTGGATCAAACAGGTTTTTCACCCATATAGTCATGGCTTATGCCTTTACCTTTTGGACATGCTATGTTTTGAAAAGAGAGTATGAGATAATTGCGTCAATGAGGCTGCATTTTATTGCATCAGAACAGCGGCGGCCTGATCAATTTACTGTGCTCGTCAGAAATGTGCCGCCAGATCCTGATGAGTCGGTCAATGAACTTGTGGAGCACTTTTTTCTTGTCAACCATCCAGATCACTACTTATCTCATCAGGTTGTTTATAATGCAAACTCGCTCTCCAATATGGTAAATGAGAAGAAAAAGAAGCAGAATTGGCTTGACTACTATCAACTTAAGTATAACAGAAATAACCAGTCAAAAAGACCAACAATGAAGACTGGTTTTCTTGGACTATATGGGAAGAGTGTGGATGCTATTGATTATTACAGAGATGAGATTGAGAAACTAATGAAAGAAATAATTAAAGAGAGGGAAAAGATTACTAAGAGCTCCAAGTACGTTATGCCGGCCGCATTTGTTTCATTCAAAACACGATGGGGGGCTGCCGTTTGTGCACAAACCGAACAATCCAGGAACCCAACTATTTGGTTAACCGAGTGGGCTCCGGAGCCACGTGATGTTTATTGGGATAACCTTGCCATTCCATTTGTTTCACTCACAATTAGAAGACTTATAATTGCTGTGGCTTTTTTCTTCCTCACATTCTTCTTTGTGATCCCAATAGCATTTGTACAGTCGCTTGCAAATATAGATGGAATAGTAAAAGCAGCCCCTTTCTTGCAGAGCGTTTTGGAAGTGAAATTTGTGAAGTCTTTCATTCAAGGTGTTCTTCCAGGAATTGCTTTAAAGATCTTCCTCATTCTTCTACCCTCAATTCTGATGATGATGTCTAAGTTTGAAGGATTCACCTCTATATCAGCCCTCGAGAGAAGATCTGCGACTAGATATTATATTTTTCAATTTATCAATGTCTTCCTTGGGAGCATAATTACCGGGACTGCCTTTCAACAGCTCAATAACTTTATCCACCAGTCAGCAAACACTATCCCGATGACGATTGGTGCATCTATACCGATGAAAGCAACCTTCTTTATAACTTATATCATGGTAGACGGATGGGCTGGAGTTGCCGGGGAGATTCTGAGGCTGAAACCGCTAATATTCTATCACTTGAAGAATTTTTTCTTGGTGAAAACCGAAAAGGATAGGGAGGACGCAATGAATCCCGGAAGTTTGTCTTTCAACACCGGTGAACCTCAAATCCAGCTTTATTTCTTGCTTGGCCTCGTTTACGCTGCTGTCACCCCGATTCTGCTGCCTTTTATAGTCGTATTCTTTGCCTTGGCTTACGTTGTATACCGTCATCAGATTATAAATGTCTATAATCAGCAATACGAAAGTGCAGGAGCTTTCTGGCCGGACGTTCATGGCCGCATCATAACTGCACTGATCGTTTCACAGCTGCTTTTGATGGGCCTGCTTAGCACAAAAGAAGCTGCTCAATCAACTCCGTTGCTTATTGCACTCCCGGTGTTAACGATATGGTTTCACCGATTTTGTAAAGGCCGTTTTGAACCAGCTTTCATCAGATACCCTTTACAGGAAGCCATGATGAAAGACACACTAGAACGCGCAAGGGAGCCATGTCTAGACGTCAAAGATTATTTAGAGAATGCATATGTTCACCCGGTCTTCAATAACGAAGACCGATGGGATGGAAGTGATGATGGTGGAGTCGTTAGTGATGATGATGAGAAAGAACCGGCACTCGTACCCACAAAACGTCAGTCACGGATGAACACGCCATCACAGAGCAAACGAAGCGAGTCATCACGAACTTTGTTGTCCGTTACAGATGAAAGATCGTGTCCGTAA 2322 42.16 MASSSEIGLAAAINILTAFAFLVAFAILRIQPFNDRVYFPKWYLKGLRSNPLQAGAFVQKFVNLDFRSYLRFLNWMPAALHMPEPELIDHAGLDSVVYLRIYLTGLKIFVPIACLAFSVMVPVNWTNRTLEESKLTFTDIDKLSISNIPTGSNRFFTHIVMAYAFTFWTCYVLKREYEIIASMRLHFIASEQRRPDQFTVLVRNVPPDPDESVNELVEHFFLVNHPDHYLSHQVVYNANSLSNMVNEKKKKQNWLDYYQLKYNRNNQSKRPTMKTGFLGLYGKSVDAIDYYRDEIEKLMKEIIKEREKITKSSKYVMPAAFVSFKTRWGAAVCAQTEQSRNPTIWLTEWAPEPRDVYWDNLAIPFVSLTIRRLIIAVAFFFLTFFFVIPIAFVQSLANIDGIVKAAPFLQSVLEVKFVKSFIQGVLPGIALKIFLILLPSILMMMSKFEGFTSISALERRSATRYYIFQFINVFLGSIITGTAFQQLNNFIHQSANTIPMTIGASIPMKATFFITYIMVDGWAGVAGEILRLKPLIFYHLKNFFLVKTEKDREDAMNPGSLSFNTGEPQIQLYFLLGLVYAAVTPILLPFIVVFFALAYVVYRHQIINVYNQQYESAGAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLIALPVLTIWFHRFCKGRFEPAFIRYPLQEAMMKDTLERAREPCLDVKDYLENAYVHPVFNNEDRWDGSDDGGVVSDDDEKEPALVPTKRQSRMNTPSQSKRSESSRTLLSVTDERSCP 773
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01543 773 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 7 729 IPR045122 GO:0005227(InterPro)|GO:0005227(PANTHER)|GO:0005886(PANTHER)
Ceso2g01543 773 MobiDBLite consensus disorder prediction 743 773 - -
Ceso2g01543 773 Pfam Cytosolic domain of 10TM putative phosphate transporter 197 360 IPR027815 -
Ceso2g01543 773 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Ceso2g01543 773 Pfam Calcium-dependent channel, 7TM region, putative phosphate 371 643 IPR003864 GO:0016020(InterPro)
Ceso2g01543 773 MobiDBLite consensus disorder prediction 716 773 - -
Ceso2g01543 773 Coils Coil 288 312 - -
Ceso2g01543 773 MobiDBLite consensus disorder prediction 717 741 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01543 K21989 calcium permeable stress-gated cation channel
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:32796948 Ceso6g00178 Ceso-Chr6:2013594 dispersed
Ceso Ceso-Chr2:32796948 Ceso1g02281 Ceso-Chr1:54290171 transposed