AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01546 ATGACGGTGAAGAAGAGATCTGTAGCTTCTTCTGCTGCTGCTTCTAGACGCCAAATTCCGGCTTTTGTTTCTAAGTTTGTCATCTCGTTGTTGATAATATTTTGTTTTGTTGCCTTTTGCGGACTCTTCTCTCAATTTAAGCTTCAATCGTCATCCCTTCCAACTGGATTTTATTTTGATGACTTTCGTCTCCATGATTATTATAATCCTGTGAAGAAGATCGCTTTCCTTTTTCTTGTGAGAGATAATCTTCCTCTTGATTTCCTTTGGCACAACTTCTTTAAGAATGCAGATCCTGAGAATTTCACGATTTACATACACTCGAAGCCTGGTTTTGTGTTTGATGAGTCGGTTACCAGATCAGTCTTTTTCTACAACCGACAGTTGGAAAACAGTGTGGAGGTGGGTTGGGGTAAGCCAACCATGATTGAAGCAGAGAAACTGCTGTTCAAGGCCGCCCTTGATGATCCAAGCAATCAGATATTTGTTCTCCTGTCTGACAGCTGTGTACCACTATACGATTTCAGTCACATATACACATATCTCATGTCCTCTCCAAGAAGCTTCGTGGATGGCTTCATTGATTTCAAGGAAAATCGCTATAATCCGGAGATGTCCCCTGACATACCTGAAGACAAATGGCGGAAAGGATCCCAGTGGATCACATTGGCTAGAAAACATGCGGAGATGGTTGCATACGATCATGTTGTTTTCCCAATCTTTGAGAAACACTGCAAGCGGCGACCTCTTCTAGACTTGAGCAGGGGAAACGAGTCTCTTAAAGAACAGCAGCAACACAATTGCATTCCAGATGAACATTATGTTCCTACCTTACTTTCTATGCGGGGTGTTGAAGATGAATTGGAGCGAAGGACGTTAACTTATTCTTTATGGAACCAGTCTACAGAAACGATGAATACACAAGCCTGGCATCCTGTAACATTTGGCTATGCAAGTGCCAGCCAGAAACATATTCAAGATATCAAGGATATCGACCATATTTATTTCGAGTCTGAGAACCGGACCGAATGGTGTGGTACTAAATCTAGTAGCGGTTCTTGTTATTTATTTGCGAGGAAGTTCTCGCGTGGTGCAGCTATGCGACTTCTGACCAATGGGGTGGTTGGTCCGTATGATCCTAACACGATGTTCCAAGACCTCACATAG 1167 42.67 MTVKKRSVASSAAASRRQIPAFVSKFVISLLIIFCFVAFCGLFSQFKLQSSSLPTGFYFDDFRLHDYYNPVKKIAFLFLVRDNLPLDFLWHNFFKNADPENFTIYIHSKPGFVFDESVTRSVFFYNRQLENSVEVGWGKPTMIEAEKLLFKAALDDPSNQIFVLLSDSCVPLYDFSHIYTYLMSSPRSFVDGFIDFKENRYNPEMSPDIPEDKWRKGSQWITLARKHAEMVAYDHVVFPIFEKHCKRRPLLDLSRGNESLKEQQQHNCIPDEHYVPTLLSMRGVEDELERRTLTYSLWNQSTETMNTQAWHPVTFGYASASQKHIQDIKDIDHIYFESENRTEWCGTKSSSGSCYLFARKFSRGAAMRLLTNGVVGPYDPNTMFQDLT 388
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01546 388 Pfam Core-2-I-Branching enzyme 74 328 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Ceso2g01546 388 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 69 370 IPR044174 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01546 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:797518 Ceso2g01546 Ceso-Chr2:32827793 dispersed
Ceso Ceso-Chr1:54196101 Ceso2g01546 Ceso-Chr2:32827793 dispersed
Ceso Ceso-Chr2:32827793 Ceso4g02450 Ceso-Chr4:47747046 dispersed
Ceso Ceso-Chr2:32827793 Ceso1g02276 Ceso-Chr1:54145535 transposed