AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01566 ATGGGCACCATGTTCAAAGTGAGCTTGCTCTTGTTGTTCCTTCTCTCGCCTACCGCATATTCGGCTTCTACTGGTGGATTGTTTAGAGTTGGACTTAAAAAGAGGAGTCTCAATATACTGAACCAACCTGGTGAACATTCTAGAAGAAGTTATGGTCTACGTGGCAATTTCAGGGATTCACACGGTGATGTTATTGCTCTAAAGAACTACATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACTCCACCCCAAAAGTTCACTGTGATTTTCGACACCGGAAGTTCTAATCTGTGGGTGCCTTCTACAAAGTGCTACTTCTCGGTTGCTTGCTTTTTTCACTCCAAATATAAGTCTAGCCATTCAAGGACCTATAAGAAAAATGGGACATCCGCTGCAATTCAATATGGAACTGGCTCTATCTCTGGTTTCTATAGCCAAGATTCTGTCAAACTTGGTGATCTTGTCGTTAAAGAGCAGGATTTTATAGAGGCAACCAAAGAGCCTGGCGTCACTTTCTTGGCAGCCAAATTTGATGGTATACTTGGCCTTGGGTTTCAAGAGATCTCTGTTGGCGGTGCCGTCCCTGTTTGGTACTCGATGGTGAACCAAGGTCTTGTTCAAGACCCTGTATTTTCATTTTGGCTTAACCGCAATACTCATCAGCAGGAAGGGGGTGAACTTGTGTTTGGTGGGGTTGATCCTAATCATTTCAAGGGCGAACACACATATGTCCCCGTGACTCAAAAGGGCTATTGGCAGTTTAATATGGGTGATGTCCTGATTGGTGACAAAACAACTGGATTTTGCGAGAATGGTTGTGCAGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGCCCCACGACGGTTGTTGCTCAAATCAATGAAGCCATTGGCGCTGCGGGGGTTATGAGCGAACAATGCAAGTCATTGGTTGATCAGTATGGGAAGGCTATCATTGAGATGCTCTTATCTGAGGTAGCTGAACTTGGTTCTTTCTATTCTCTCGTTTCTGAAAGTTACTGTTTTTCTTTCCCATGTGCTATAAATGGGCATTTGGAGCAACCTGAAAAAGTCTGCTCCCAAATGAAGTTATGTACTTTTGATGGTTCTCATGATACTAGCATGATAATTGAGAGTGTGGTTGACAAGAATAAGGGCAAATCTTCTGGTGCACACGATGAGATGTGTACCTTCTGCGAGATGGCAGTTATTTGGATGCGAAACCAGATCAGGCAAAACGAGACCGAAGAAAACATAATTAAATATGTTGATAAGCTGTGTGAGCGGTTGCCAAGTCCAATGGGAGAGTCTGCAGTCAACTGTAGCAGTCTTTCCTCGATGCCCAATATTGCCTTTACTATCGGTGGTAAAACCTTTGACCTCTCCCCCGAACAGTATGTCTTGAAGGTTGGGGAAGGACCAACATCACAATGCATAAGCGGATTCACGGCCATGGATGTGGCACCTCCTCGTGGACCTCTATGGATCTTGGGAGATGTTTTTATGGGTCAATACCATACGGTGTTCGACTATGGTAACTTACAAATTGGGTTCGCGAAAGCAGCTTGA 1578 44.42 MGTMFKVSLLLLFLLSPTAYSASTGGLFRVGLKKRSLNILNQPGEHSRRSYGLRGNFRDSHGDVIALKNYMDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCYFSVACFFHSKYKSSHSRTYKKNGTSAAIQYGTGSISGFYSQDSVKLGDLVVKEQDFIEATKEPGVTFLAAKFDGILGLGFQEISVGGAVPVWYSMVNQGLVQDPVFSFWLNRNTHQQEGGELVFGGVDPNHFKGEHTYVPVTQKGYWQFNMGDVLIGDKTTGFCENGCAAIADSGTSLLAGPTTVVAQINEAIGAAGVMSEQCKSLVDQYGKAIIEMLLSEVAELGSFYSLVSESYCFSFPCAINGHLEQPEKVCSQMKLCTFDGSHDTSMIIESVVDKNKGKSSGAHDEMCTFCEMAVIWMRNQIRQNETEENIIKYVDKLCERLPSPMGESAVNCSSLSSMPNIAFTIGGKTFDLSPEQYVLKVGEGPTSQCISGFTAMDVAPPRGPLWILGDVFMGQYHTVFDYGNLQIGFAKAA 525
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01566 525 PRINTS Pepsin (A1) aspartic protease family signature 498 513 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Ceso2g01566 525 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Ceso2g01566 525 PRINTS Pepsin (A1) aspartic protease family signature 227 240 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Ceso2g01566 525 ProSiteProfiles Saposin B type domain profile. 395 436 IPR008139 -
Ceso2g01566 525 Pfam Saposin-like type B, region 1 398 434 IPR007856 GO:0006629(InterPro)
Ceso2g01566 525 Pfam Saposin-like type B, region 2 309 329 IPR008138 -
Ceso2g01566 525 ProSiteProfiles Peptidase family A1 domain profile. 75 522 IPR033121 -
Ceso2g01566 525 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Ceso2g01566 525 CDD phytepsin 65 523 IPR033869 GO:0004190(InterPro)
Ceso2g01566 525 FunFam Vacuolar aspartic proteinase 417 524 - -
Ceso2g01566 525 Pfam Eukaryotic aspartyl protease 74 524 IPR033121 -
Ceso2g01566 525 FunFam Lysosomal aspartic protease 61 303 - -
Ceso2g01566 525 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 277 288 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Ceso2g01566 525 Gene3D Acid Proteases 234 525 IPR021109 -
Ceso2g01566 525 Gene3D Acid Proteases 29 233 IPR021109 -
Ceso2g01566 525 Gene3D - 305 434 - -
Ceso2g01566 525 ProSiteProfiles Saposin B type domain profile. 305 372 IPR008139 -
Ceso2g01566 525 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 12 524 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(PANTHER)|GO:0006508(InterPro)
Ceso2g01566 525 SUPERFAMILY Saposin 356 434 IPR011001 -
Ceso2g01566 525 SUPERFAMILY Acid proteases 13 524 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01566 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
40258 Ceso2g01566 Ceso4g01808
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:33256816 Ceso3g02361 Ceso-Chr3:48534823 dispersed
Ceso Ceso-Chr1:69663309 Ceso2g01566 Ceso-Chr2:33256816 transposed
Ceso Ceso-Chr2:33256816 Ceso4g01808 Ceso-Chr4:32410848 wgd