AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01574 ATGCCGATTACCGGACCTCATTCCTCAGCTCTCCTCCGCCGAGCTTCTTCTTCTTCTAGGTCCTCCTCCGCCGCCGCCACCACCACCAGGCACTTCCACTCTTCCTCACTTTCCGGTAAACCTTCACCATCACCACTCGCCTCCTCTCGCTCTCGATCTCATCACGCCACCGCCTCCGCCGCTTTCCGGTCTCTCCGATCTCCGTGGAGCCACGGCGTCGATTGGAAGTCTCCTGCTTCTCTCTCTTCTCAGATCAGGACCACTGCTTCTCCAATCCTTGACCGTTTCCACCGTTCTCTCGCTACTATCGCCTCCAAGAATGTTTTCAATGGGATTTTGACTGGTCTCCCAAAGCCTGGAGGTGGGGAGTTTGGAAAGTTCTATAGTTTGCCTGCTCTGAATGATCCAAGAGTTGATAAGCTGCCATATTCCATTAGGATCCTCCTCGAATCAGCAATCCGTAATTGTGACGGTTTTCAAGTCACTAAGGAAGATGTTGAGAAAATCATTGATTGGGAGAAGACTGCTCCAAAGCAAGTTGAGATTCCATTCAAGCCGGCTCGTGTTCTGTTGCAGGATTTTACTGGTGTGCCAGCTGTGGTAGATCTTGCATGTATGCGTGATGCCATGAATAATCTTGGCGGGGACTCTGACAAAATCAATCCTTTGGTTCCTGTGGATCTTGTCGTAGATCATTCGGTTCAAGTTGATTTTGCTAGGTCAGAAAATGCAGTACAAGCAAATATGGAACTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCTTTCCAGAACATGCTAGTGGTTCCACCAGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGACGAGTTGTCTTCAACACTGATGGAATGCTCTACCCTGATAGTGTTGTCGGAACTGATTCCCACACAACGATGATTGACGGGTTAGGTGTTGCTGGTTGGGGAGTGGGAGGAATTGAAGCAGAGGCCACAATGCTTGGGCAGTCTTGGCTTATGTCTTGTTGCTTAGTGTTGATTGTTGATGTCCAGCTGTGTTGGTTGCTCCCTCATGGGCCAATGAGCATGGTTTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGGAAACTGCGCAATGGTGTAACAGCTACTGATTTGGTTTTGACCGTCACTCAAATGTTAAGGAAGCATGGTGTCGTAGGAAAATTCGTTGAATTCCACGGGGAAGGTGTGGGTAAAATATCACTTGCTGACAGGGCTACTATAGCCAACATGTCGCCCGAATATGGTGCAACAATGGGGTTCTTCCCAGTGGATCATGTTACTCTTCAGTACCTCAAATTAACTGGACGAAGTGATGATACAGTTGCTATGATCGAAGCGTACTTACGTGCAAACAATATGTTCGTTGATTATAATGAGCCACAACCAGACAGAGTCTACTCATCATACTTGGAGCTAGATCTTTCAGATGTAGAACCCTGTATTTCAGGGCCAAAGAGACCTCATGACCGAGTCACTTTGAAAGACATGAAAGCAGATTGGCATTCTTGCTTGGATAGTAAAGTCGGATTCAAAGGTTTTGCTGTACCAAAGGAGGCACAAGACAAAGTTGCAAAATTTTCTTTTCATGGACAACCAGCAGAGCTTAGGCATGGCAGCGTTGTGATTGCTGCTATCACAAGCTGCACAAATACATCAAACCCTAGTGTTATGCTTGGGGCAGGTCTTGTTGCAAAGAAAGCCTGTGAATTGGGCCTAAAGGTCAAACCATGGGTTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACAAAATATTTGCTCCAAAGTGGGTTGCAGAAGTATTTGAATGAGCAAGGTTTCAACATCGTTGGATATGGCTGCACAACATGTATTGGTAATTCAGGGGAATTAGATGAATCTGTTGGTGCTGCTATAACTGAAAATGATATCATTGCCTCAGCTGTTCTCTCTGGGAACCGAAACTTCGAGGGGCGTGTTCATGCCTTAACTAGAGCAAACTATCTTGCATCGCCTCCTTTGGTTGTTGCTTATGCACTTGCTGGCACGGTTGATATTGATTTTGATAAGGAACCAATTGGAGTTGGAAAAGATGGAAAGGACGTATATTTCAGTGATATCTGGCCAAGTACCGAAGAAATTGCTGAGGCTGTTCAATCGAGTGTTCTTCCCGCCATGTTTAAGAGCACTTATGAATCCATCACTCAGGGAAATCCCATGTGGAATGACCTATCAGTCCCTGAATCTAAGCTATACTCATGGGATACAAACTCTACCTACATTCATGAGCCACCATATTTCAAAAACATGACAATGGACCCCCCTGGGGCCCACGGTGTGAAGGATGCCTATTGCTTGCTGAACTTCGGTGACAGTATCACAACGGATCACATTTCTCCCGCAGGAAGCATCCACAAGGACAGCCCTGCTGCAAAGTTTCTTCTTGAACATGGTGTTGACCGCAAGGACTTCAATTCCTATGGCAGTCGTCGAGGTAATGATGAAATTATGGCAAGGGGTACTTTTGCCAATATCCGCATTGTCAACAAGCTCTTAAACGGGGAAGTTGGCCCAAAGACCATACATGTTCCCACCGGAGAGAAACTCTCGGTGTTCGATGCAGCATCAAAATACAAAGCTGCTGGTCAGGATACAATTGTGTTGGCTGGGGCAGAGTATGGAAGTGGAAGCTCCAGAGATTGGGCTGCCAAGGGTCCCATGTTATTGGGAGTTAAAGCGGTGATTGCAAAAAGCTTTGAGAGGATTCATCGCAGTAATTTGGTAGGAATGGGCATTATACCACTTTGCTTCAAAGCTGGTGAGGATGCCGACACATTACAGTTGACCGGTCATGAACGATACACCATTGACCTACCGAGCAACATTAGTGAGATCCGCCCTGGTCAAGATGTCAATGTCAGCACCGACACCGGAAAGTCCTTCACGTGTACCGTCCGCTTTGACACTGAGGTACTTCTTCACTTCATTTATTCGTTTCAGTGA 3036 46.28 MPITGPHSSALLRRASSSSRSSSAAATTTRHFHSSSLSGKPSPSPLASSRSRSHHATASAAFRSLRSPWSHGVDWKSPASLSSQIRTTASPILDRFHRSLATIASKNVFNGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDGFQVTKEDVEKIIDWEKTAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDSDKINPLVPVDLVVDHSVQVDFARSENAVQANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQSWLMSCCLVLIVDVQLCWLLPHGPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGEGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQPDRVYSSYLELDLSDVEPCISGPKRPHDRVTLKDMKADWHSCLDSKVGFKGFAVPKEAQDKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLKVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDESVGAAITENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFDKEPIGVGKDGKDVYFSDIWPSTEEIAEAVQSSVLPAMFKSTYESITQGNPMWNDLSVPESKLYSWDTNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLEHGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLNGEVGPKTIHVPTGEKLSVFDAASKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVNVSTDTGKSFTCTVRFDTEVLLHFIYSFQ 1011
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01574 1011 MobiDBLite consensus disorder prediction 1 53 - -
Ceso2g01574 1011 Gene3D Aconitase, domain 3 498 721 IPR015931 -
Ceso2g01574 1011 MobiDBLite consensus disorder prediction 10 53 - -
Ceso2g01574 1011 ProSitePatterns Aconitase family signature 1. 558 574 IPR018136 -
Ceso2g01574 1011 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 106 1005 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Ceso2g01574 1011 FunFam cytoplasmic aconitate hydratase 498 721 - -
Ceso2g01574 1011 CDD AcnA-IRP-Swivel 799 969 IPR044137 -
Ceso2g01574 1011 Gene3D Aconitase, domain 3 109 497 IPR015931 -
Ceso2g01574 1011 SUPERFAMILY Aconitase iron-sulfur domain 121 758 IPR036008 -
Ceso2g01574 1011 Pfam Aconitase family (aconitate hydratase) 361 693 IPR001030 -
Ceso2g01574 1011 Pfam Aconitase family (aconitate hydratase) 167 353 IPR001030 -
Ceso2g01574 1011 CDD AcnA-IRP 188 695 - -
Ceso2g01574 1011 Gene3D Aconitase, domain 4 786 1009 IPR015928 -
Ceso2g01574 1011 PRINTS Aconitase family signature 497 511 IPR001030 -
Ceso2g01574 1011 PRINTS Aconitase family signature 562 573 IPR001030 -
Ceso2g01574 1011 PRINTS Aconitase family signature 401 414 IPR001030 -
Ceso2g01574 1011 PRINTS Aconitase family signature 624 637 IPR001030 -
Ceso2g01574 1011 PRINTS Aconitase family signature 415 428 IPR001030 -
Ceso2g01574 1011 PRINTS Aconitase family signature 249 262 IPR001030 -
Ceso2g01574 1011 NCBIfam aconitate hydratase AcnA 362 1007 IPR006249 -
Ceso2g01574 1011 ProSitePatterns Aconitase family signature 2. 624 637 IPR018136 -
Ceso2g01574 1011 Gene3D - 722 783 - -
Ceso2g01574 1011 FunFam Aconitate hydratase 785 1009 - -
Ceso2g01574 1011 Pfam Aconitase C-terminal domain 822 950 IPR000573 -
Ceso2g01574 1011 SUPERFAMILY LeuD-IlvD-like 762 1007 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01574 K01681 aconitate hydratase [EC:4.2.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
40260 Ceso2g01574 Ceso4g01815
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr4:24160070 Ceso2g01574 Ceso-Chr2:33576926 transposed
Ceso Ceso-Chr2:33576926 Ceso4g01815 Ceso-Chr4:32640435 wgd