AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01580 ATGAGCCAGATTACCAAAAAAATATGGGGATTAAACCTCAAGAGAACGATCATCTGGCGTGTAGCTTTTCTCCGGCGATGTGCACGATCTCTTTGGCACCAAATTCTTGCTTGTTTGATCGGAAAAACTCTCCGATATCGTCATTTGTTAAGTTCCGGTTCCGGTTCCGGCCCTTTGATACCGACTTCTCTTCGTCGGCCGGAAATGATGATGACACCCTCTACCACCGGCGAAATGACGTCATCCTCCGATGATGGTTCCGATTTGGTGGCTTTGAAGATTAGTTTGTTGGGTGATCAGCATATTGGCAAAACAAGCTTCTTGGCAAAGTATGTTGGGAAAGAGAAGAATGAAGAAGAATTAGAAGGCAGAGGAATAAATCAAATGGATAAAACACTTTGTGTTAGAGGAGCCAGGATCGCCTACAGTATCTGGGAAGTCGGTGGTGATGCATTTTATCCAGATGGTGATTTGAAGACTTCGATTCCAGCCGCTTGTAAAGACTCTGTTGCTATACTATTCATGTTCGATTTAACGAGTCGATGTACACTTAACAGTGTCATCAATTGGCACCAGCAAGCCAGGTATCATAATCAGATGGCAATTCCGGTGATGGTCGGGAGCAAGTTTGACGAATTCGTTCAGCTTCCGTTAGATTTACAATGGACGATCGCAAACCAGGCTAGAGCATACGCAAAGGCCATAAACGCAACCTTGTTCTTCTCGAGTGCATCTTACAACATAAATGTAAATAAAATCTTCAAGTTCGTAACTGCAAAGCTCTTTGACTTGCCTTGGGTTTTGGAGCGTAACCTTACAATTGGTGAGCCTATTATCGATTTTTGA 846 43.38 MSQITKKIWGLNLKRTIIWRVAFLRRCARSLWHQILACLIGKTLRYRHLLSSGSGSGPLIPTSLRRPEMMMTPSTTGEMTSSSDDGSDLVALKISLLGDQHIGKTSFLAKYVGKEKNEEELEGRGINQMDKTLCVRGARIAYSIWEVGGDAFYPDGDLKTSIPAACKDSVAILFMFDLTSRCTLNSVINWHQQARYHNQMAIPVMVGSKFDEFVQLPLDLQWTIANQARAYAKAINATLFFSSASYNINVNKIFKFVTAKLFDLPWVLERNLTIGEPIIDF 281
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01580 281 Gene3D - 80 268 IPR027417 -
Ceso2g01580 281 Pfam Ras family 93 260 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Ceso2g01580 281 PRINTS Transforming protein P21 ras signature 92 113 - -
Ceso2g01580 281 PRINTS Transforming protein P21 ras signature 239 261 - -
Ceso2g01580 281 PRINTS Transforming protein P21 ras signature 199 212 - -
Ceso2g01580 281 PRINTS Transforming protein P21 ras signature 133 155 - -
Ceso2g01580 281 FunFam Septum-promoting GTP-binding protein 1 82 271 - -
Ceso2g01580 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 273 IPR027417 -
Ceso2g01580 281 PANTHER - 90 280 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Ceso2g01580 281 ProSiteProfiles small GTPase Rab1 family profile. 82 281 - -
Ceso2g01580 281 SMART rab-sub-5 92 264 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01580 K07976 Rab family, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:101785566 Ceso2g01580 Ceso-Chr2:33656631 dispersed
Ceso Ceso-Chr2:33656631 Ceso4g01895 Ceso-Chr4:34366408 dispersed
Ceso Ceso-Chr2:33656631 Ceso2g02244 Ceso-Chr2:55550125 transposed