AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ceso2g01583 | ATGAAGATCCAGTGCGACGTTTGTCACAAAGCCGAGGCCACCGTTTACTGCACCGCCGATGAAGCCTCCTTATGCTCCGCCTGCGACCACCGTGTTCACCATGCCAATAAGCTCGCCAACCGACATCCCAGATTCTCGCTCCTCCATCCGTCTTTCAAAGACTCACCTCGTTGCGATATCTGTCAGGAGAGGAGAGCGTTTTTGTTTTGCAAAGAAGATCGAGCGATTTTGTGCAGGGAATGCGACGTTCCGATTCACAAGGCGAACGAACACACGCAGAAGCACACTCGATTCCTTCTCACCGGCGTTAAACTCTCCACATCCTTATCGTGTTACGATGATTCATCCTCGTCGAATTCCAACTGTTCTATCGAGATCGAAAGCACAAAAGGATCCGGTGGTGTTTCGATCGATCAACAAAGCGGTTCGATAAATAATCATTATCCAAATTGTAGTGAGAGCCATGAAGAAGAAGGTGCTTCAATGGAGGGAAGGAGTATTTCAGAGTATCTGATGGAAACCTTGCCTGGATGGCATGTTGATGAGTTCCTTGATCCTTATGGCTTCTGTAAGTTTTCTATAATTTTTCGAATTTGGTACTTTTAG | 606 | 46.7 | MKIQCDVCHKAEATVYCTADEASLCSACDHRVHHANKLANRHPRFSLLHPSFKDSPRCDICQERRAFLFCKEDRAILCRECDVPIHKANEHTQKHTRFLLTGVKLSTSLSCYDDSSSSNSNCSIEIESTKGSGGVSIDQQSGSINNHYPNCSESHEEEGASMEGRSISEYLMETLPGWHVDEFLDPYGFCKFSIIFRIWYF | 201 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ceso2g01583 | 201 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270(InterPro) | |
| Ceso2g01583 | 201 | CDD | Bbox1-BBX-like | 58 | 100 | IPR049808 | - | |
| Ceso2g01583 | 201 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 185 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
| Ceso2g01583 | 201 | Gene3D | Classic Zinc Finger | 1 | 99 | - | - | |
| Ceso2g01583 | 201 | CDD | Bbox1-BBX-like | 5 | 47 | IPR049808 | - | |
| Ceso2g01583 | 201 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270(InterPro) | |
| Ceso2g01583 | 201 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Ceso2g01583 | 201 | FunFam | B-box zinc finger protein 21 | 1 | 98 | - | - | |
| Ceso2g01583 | 201 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Ceso2g01583 | 201 | Pfam | B-box zinc finger | 54 | 94 | IPR000315 | GO:0008270(InterPro) | |
| Ceso2g01583 | 201 | Pfam | B-box zinc finger | 3 | 44 | IPR000315 | GO:0008270(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ceso2g01583 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ceso | Ceso-Chr2:33692119 | Ceso8g01024 | Ceso-Chr8:13530907 | dispersed | |
| Ceso | Ceso-Chr4:2235388 | Ceso2g01583 | Ceso-Chr2:33692119 | transposed | |
| Ceso | Ceso-Chr8:13837408 | Ceso2g01583 | Ceso-Chr2:33692119 | transposed | |
| Ceso | Ceso-Chr1:87633100 | Ceso2g01583 | Ceso-Chr2:33692119 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ceso8g00615 | . | 49 | 406 | C2C2-CO-like Transcription Factor family | AT5G24930 | 50.388 | 7.51e-96 | 290.0 | |
| Ceso8g01024 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 46.131 | 4.00e-80 | 243.0 | |
| Ceso8g01039 | . | 1 | 224 | C2C2-CO-like Transcription Factor family | AT1G75540 | 50.0 | 6.21e-66 | 207.0 | |
| Ceso7g00038 | ACH | 312 | 397 | C2C2-CO-like Transcription Factor family | AT5G24930 | 40.698 | 3.00e-10 | 58.5 | |
| Ceso7g02184 | ACH | 334 | 386 | C2C2-CO-like Transcription Factor family | AT5G24930 | 49.057 | 5.10e-11 | 62.0 | |
| Ceso6g00211 | . | 8 | 328 | C2C2-CO-like Transcription Factor family | AT2G47890 | 39.84 | 6.80e-76 | 236.0 | |
| Ceso6g00699 | . | 221 | 324 | C2C2-CO-like Transcription Factor family | AT5G57660 | 40.0 | 1.29e-14 | 67.0 | |
| Ceso6g00739 | . | 282 | 338 | C2C2-CO-like Transcription Factor family | AT5G15850 | 45.614 | 2.18e-12 | 63.9 | |
| Ceso5g02205 | . | 289 | 401 | C2C2-CO-like Transcription Factor family | AT1G68520 | 27.434 | 1.55e-06 | 48.1 | |
| Ceso5g03072 | ACH | 3 | 114 | C2C2-CO-like Transcription Factor family | AT4G27310 | 50.833 | 5.32e-31 | 112.0 | |
| Ceso4g00226 | . | 1 | 167 | C2C2-CO-like Transcription Factor family | AT4G38960 | 60.714 | 6.01e-78 | 230.0 | |
| Ceso4g00276 | . | 1 | 87 | C2C2-CO-like Transcription Factor family | AT4G27310 | 54.545 | 1.76e-28 | 106.0 | |
| Ceso4g00275 | ACH | 1 | 75 | C2C2-CO-like Transcription Factor family | AT4G27310 | 61.842 | 8.53e-29 | 106.0 | |
| Ceso4g01575 | ACH | 178 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 45.926 | 1.21e-21 | 86.3 | |
| Ceso4g03007 | ACH | 259 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 41.096 | 7.76e-11 | 60.1 | |
| Ceso4g04174 | . | 12 | 280 | C2C2-CO-like Transcription Factor family | AT1G68190 | 40.667 | 1.75e-61 | 201.0 | |
| Ceso3g00622 | . | 190 | 276 | C2C2-CO-like Transcription Factor family | AT2G24790 | 41.379 | 2.05e-11 | 62.0 | |
| Ceso3g01032 | ACH | 305 | 380 | C2C2-CO-like Transcription Factor family | AT5G24930 | 45.455 | 7.73e-12 | 64.7 | |
| Ceso3g03126 | . | 2 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 46.373 | 1.02e-92 | 281.0 | |
| Ceso2g01583 | . | 1 | 206 | C2C2-CO-like Transcription Factor family | AT1G75540 | 52.427 | 2.80e-63 | 197.0 | |
| Ceso2g02823 | . | 56 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 51.02 | 5.86e-88 | 267.0 | |
| Ceso2g03230 | . | 228 | 319 | C2C2-CO-like Transcription Factor family | AT3G02380 | 39.13 | 3.58e-09 | 54.7 | |
| Ceso1g00021 | . | 12 | 401 | C2C2-CO-like Transcription Factor family | AT2G33500 | 38.824 | 1.38e-73 | 233.0 | |
| Ceso1g03422 | . | 1 | 331 | C2C2-CO-like Transcription Factor family | AT1G75540 | 44.898 | 3.24e-77 | 237.0 | |
| Ceso1g04231 | . | 123 | 319 | C2C2-CO-like Transcription Factor family | AT3G02380 | 29.13 | 8.46e-17 | 78.2 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Ceso | zf-B_box | 9e-08 | No_clan | TF | DBB |