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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01590 ATGGCGGACCACGGTGGCGGAGGAGGAAGAGGATGTTGTCCGCCGATGGATCTCTTCCGTTCAGAACCGATGCACTTAGTACAAATCATCATCCCTATCGAGTCTGCTCACTCTACTGCATCTTACCTTGGTGATATCGGTCTCATTCAATTCAAAGATCTGAATGCGGAGAAAAGCCCCTTCCAGCGAACATATGCAGGCCAGATTAAAAGAAGCGGAGAAATGGCACGGAAGTTGCGTTTCTTCAAAGAACAAATGTCTAAGGCGGGTCTCACACCCTCAGCGAAAACTGGCGCCCAAGGTGATATTAATCTGGATGATCTGGAGGTAACTCTTGGAGATCTTGAAGCTGAGCTGACTGAAATAAATGCAAATGGTGAAAAGTTGCAGCGTGGTTATAATGAGCTCTTAGAATATAAGCTTGTTCTGCAGAAGGCTGGAGAGTTTTTCAAAGCGGCACATAGCAGTGCGGTAGCTCAGCATAGTGAAAGTGAATTAGATCAGGCTCCTGAAGAATCTTTGGAAACTCCTCTTCTGACGGATCAAGAGTCAAAAACTGAGCAAGGAAAGCAAGTTAAATTGGGGTTTCTTGCTGGCCTTGTGGCTAAAGAAAAGACTATGGCTTTTGAAAGAATTCTATTCCGTGCTACAAGGGGTAATGTCTTTTTGAGGCAGGCTGCCGTGGAAGAAGCTGTCACTGATCCTAGCTCTGGCGAGAAGGTTTCGAAGAATGTATTTCTGGTTTTCTTTTCTGGAGAAAGAGCAAAAAGCAAAGTTCTCAAAATATGTGAAGCTTTTGGAGCAAACCGTTACCCTTTTGCTGACGATCCTAGCAAACAAGAACAGTTAATAACTGAGGTATCTGGAAGGATATCTGAGCTGAAGACGACGATAGATCTTGGACTTGTGCACCGTGGCAATTTGTTACAAAGGATTGGAGAACAATATGAAGGGTGGAACGTTTTGGTGCGAAGAGAGAAATCGATCTATCATACTCTAAATATGCTCAGCATCGATGTGACTAGAAAGTGTCTTGTGGCTGAAGGGTGGAGTCCCATATATGCAACCGAACAGATTCAAGATGCACTGGAGAGGGCAACAATAGATTCCAATTCACAAGTTGGTGCTATATTTCAGGTTTTGCCCACAAAAGAGTTGCCTCCGACCTTTTTCCAGACAAACAAGTTTACTGATTCCTTCCAAACAATCGTGGATGCATATGGGGTTGCCAAGTACCAAGAAGCAAATCCTGGAGTATACACTATCGTCACATTCCCATTTCTGTTTGCTGTAATGTTCGGTGACTGGGGGCATGGTATATGCCTGTTGCTGGCAACACTTTTTTTGATATTCAAGGAGAAGAAATATTCCACTCAGAAGCTTGGAGACATTATGGAGATGACCTTTGGGGGCCGTTATGTGATATTGTTGATGTCACTTTTCTCAATCTACACGGGTTTGATCTATAACGAGTTCTTCTCTGTTCCATTTGAGTTATTTAGCCCTTCTGCGTATGTATGCCGTGATGATGCTTGCAGTGAAGCTACCACTATTGGCTTGATAAAGGGGAGGGATACATACCCATTCGGTGTGGATCCTGCATGGCATGGGAGTCGCAGTGAGTTGCCGTTCCTCAACTCATTGAAGATGAAAATGTCAATTCTTCTTGGGGTAGCACAAATGAACCTTGGAATAATATTGAGCTTTTTCAACGCTTTGTACTTTCGGAATCCCGTAAATATTTGGTTCCAGTTTATCCCTCAGATGATCTTTTTGAATGGATTATTTGGATACCTTTCCCTCCTCATCATTGTGAAGTGGTGCACCGGGTCAAAAGCTGATTTATACCATGTAATGATATACATGTTCCTTAGTCCTACTGATGAACTTGGTGAAAACCAACTTTTCGCAAACCAGAAGACAGTTCAGCTTGTTCTGCTACTACTATCCTTGATTGCCGTCCCGTGGATGCTGCTACCTAAGCCTTTCATTTTAAAGGCACAACACAAGAGGACACACGAAGGCCAGTCGTACATACCCATCGAAGGTGAGGATGACTCTTTGCAAGTGGAGGCAAATCATGATTCCCATGCTCATGAAGAAGAATTTGAGTTCAGTGAAATATTTGTTCATCAACTCATCCACACAATAGAATTTGTACTTGGGGCAGTATCAAATACAGCTTCGTACCTTCGTTTATGGGCTCTCAGCTTGGCACATTCGGAGTTGTCAACCGTGTTCTATGAGAAGGTTCTTCTTCTTGCTTGGGGGTACAATAACGTGATAATCCTTATTGTGGGCATCATCGTGTTTGTTTTCGCAACGGTGGGTGTGTTGCTGGTGATGGAAACACTGAGTGCCTTCCTACACGCATTAAGACTTCACTGGGTGGAGTTCCAGAACAAGTTCTATGAGGGTGATGGATACTTGTTCCATCCCTTCTCCTTTGCGTTACTTGGTGACGATGATGAATGA 2475 43.68 MADHGGGGGRGCCPPMDLFRSEPMHLVQIIIPIESAHSTASYLGDIGLIQFKDLNAEKSPFQRTYAGQIKRSGEMARKLRFFKEQMSKAGLTPSAKTGAQGDINLDDLEVTLGDLEAELTEINANGEKLQRGYNELLEYKLVLQKAGEFFKAAHSSAVAQHSESELDQAPEESLETPLLTDQESKTEQGKQVKLGFLAGLVAKEKTMAFERILFRATRGNVFLRQAAVEEAVTDPSSGEKVSKNVFLVFFSGERAKSKVLKICEAFGANRYPFADDPSKQEQLITEVSGRISELKTTIDLGLVHRGNLLQRIGEQYEGWNVLVRREKSIYHTLNMLSIDVTRKCLVAEGWSPIYATEQIQDALERATIDSNSQVGAIFQVLPTKELPPTFFQTNKFTDSFQTIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLFLIFKEKKYSTQKLGDIMEMTFGGRYVILLMSLFSIYTGLIYNEFFSVPFELFSPSAYVCRDDACSEATTIGLIKGRDTYPFGVDPAWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSFFNALYFRNPVNIWFQFIPQMIFLNGLFGYLSLLIIVKWCTGSKADLYHVMIYMFLSPTDELGENQLFANQKTVQLVLLLLSLIAVPWMLLPKPFILKAQHKRTHEGQSYIPIEGEDDSLQVEANHDSHAHEEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNNVIILIVGIIVFVFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYLFHPFSFALLGDDDE 824
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01590 824 MobiDBLite consensus disorder prediction 161 186 - -
Ceso2g01590 824 Coils Coil 105 125 - -
Ceso2g01590 824 PANTHER VACUOLAR PROTON ATPASES 16 819 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Ceso2g01590 824 Pfam V-type ATPase 116kDa subunit family 42 816 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Ceso2g01590 824 PIRSF ATP6V0A1 14 824 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01590 K02154 V-type H+-transporting ATPase subunit a
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Event-related genes

Select Gene_1 Gene_2 Event_name
40261 Ceso2g01590 Ceso4g01817
40262 Ceso2g01590 Ceso8g01102
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:33762413 Ceso4g01740 Ceso-Chr4:30929235 dispersed
Ceso Ceso-Chr1:87686970 Ceso2g01590 Ceso-Chr2:33762413 wgd
Ceso Ceso-Chr2:33762413 Ceso4g01817 Ceso-Chr4:32756147 wgd
Ceso Ceso-Chr2:33762413 Ceso8g01102 Ceso-Chr8:15467540 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
CesoJARYMX010000504g00001 . 87 437 Primary Pumps ATPases gene family AT1G20260 27.654 7.44e-28 115.0
CesoJARYMX010000411g00001 . 87 437 Primary Pumps ATPases gene family AT1G20260 27.654 3.20e-28 115.0
CesoJARYMX010000248g00001 . 45 382 Primary Pumps ATPases gene family AT4G38510 30.294 2.44e-31 124.0
CesoJARYMX010000219g00002 . 54 979 Primary Pumps ATPases gene family AT1G63440 55.889 0.0 1053.0
CesoJARYMX010000218g00003 . 56 382 Primary Pumps ATPases gene family AT4G38510 26.748 4.98e-25 106.0
CesoJARYMX010000180g00003 . 45 382 Primary Pumps ATPases gene family AT4G38510 30.294 1.66e-31 125.0
CesoJARYMX010000170g00002 . 56 382 Primary Pumps ATPases gene family AT4G38510 26.748 1.82e-24 105.0
CesoJARYMX010000096g00011 . 56 382 Primary Pumps ATPases gene family AT4G38510 26.748 4.98e-25 106.0
CesoJARYMX010000065g00008 . 56 382 Primary Pumps ATPases gene family AT4G38510 26.748 4.98e-25 106.0
CesoJARYMX010000021g00012 . 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Ceso8g00781 . 33 319 Primary Pumps ATPases gene family AT5G44240 86.411 0.0 535.0
Ceso8g00844 . 1 623 Primary Pumps ATPases gene family AT1G78900 93.258 0.0 1205.0
Ceso8g01102 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 71.693 0.0 1199.0
Ceso8g01725 ACH 2 951 Primary Pumps ATPases gene family AT4G30110 53.639 0.0 1025.0
Ceso7g00415 . 540 606 Primary Pumps ATPases gene family AT3G21180 41.667 5.15e-09 58.9
Ceso7g00419 . 551 618 Primary Pumps ATPases gene family AT3G21180 50.0 9.58e-13 64.7
Ceso7g00848 . 1 109 Primary Pumps ATPases gene family AT3G01390 65.138 9.15e-39 124.0
Ceso7g01309 . 1 1014 Primary Pumps ATPases gene family AT4G37640 80.217 0.0 1661.0
Ceso7g01680 ACH 505 1150 Primary Pumps ATPases gene family AT5G04930 70.138 0.0 971.0
Ceso6g00379 . 87 1016 Primary Pumps ATPases gene family AT3G63380 57.534 0.0 974.0
Ceso6g00378 . 88 1019 Primary Pumps ATPases gene family AT3G63380 49.844 0.0 817.0
Ceso6g00381 . 23 1003 Primary Pumps ATPases gene family AT3G63380 53.575 0.0 1003.0
Ceso6g00735 ACH 1 1061 Primary Pumps ATPases gene family AT1G07810 80.339 0.0 1739.0
Ceso6g01767 . 72 1024 Primary Pumps ATPases gene family AT3G57330 69.175 0.0 1369.0
Ceso6g02229 . 1 70 Primary Pumps ATPases gene family AT5G55290 85.714 7.33e-42 129.0
Ceso6g02602 ACH 1 109 Primary Pumps ATPases gene family AT3G01390 75.229 3.92e-45 140.0
Ceso5g02033 ACH 572 1059 Primary Pumps ATPases gene family AT1G07810 79.918 0.0 812.0
Ceso5g02210 . 8 1070 Primary Pumps ATPases gene family AT5G57110 61.014 0.0 1318.0
Ceso5g02222 . 3 937 Primary Pumps ATPases gene family AT4G30190 88.342 0.0 1660.0
Ceso5g02395 ACH 6 770 Primary Pumps ATPases gene family AT1G15690 81.953 0.0 1321.0
Ceso5g02916 . 6 577 Primary Pumps ATPases gene family AT3G47950 78.188 0.0 874.0
Ceso5g03028 . 3 165 Primary Pumps ATPases gene family AT1G19910 99.387 8.86e-112 313.0
Ceso5g03131 . 246 424 Primary Pumps ATPases gene family AT3G47950 78.469 1.38e-98 323.0
Ceso5g03132 . 1 143 Primary Pumps ATPases gene family AT3G47950 75.524 1.52e-48 166.0
Ceso5g03466 . 9 1199 Primary Pumps ATPases gene family AT1G17500 57.143 0.0 1432.0
Ceso5g03652 . 1 198 Primary Pumps ATPases gene family AT1G64200 71.717 3.84e-96 279.0
Ceso5g03653 . 189 231 Primary Pumps ATPases gene family AT1G64200 79.07 7.17e-18 72.8
Ceso4g00220 . 5 166 Primary Pumps ATPases gene family AT1G75630 98.765 6.86e-107 306.0
Ceso4g00045 . 58 383 Primary Pumps ATPases gene family AT1G15700 28.994 1.15e-27 109.0
Ceso4g00084 . 58 364 Primary Pumps ATPases gene family AT1G15700 26.498 1.70e-19 86.7
Ceso4g00734 . 363 981 Primary Pumps ATPases gene family AT1G63440 36.769 1.78e-115 374.0
Ceso4g00786 ACH 3 853 Primary Pumps ATPases gene family AT4G30110 59.324 0.0 1003.0
Ceso4g00785 ACH 2 620 Primary Pumps ATPases gene family AT4G30110 67.69 0.0 883.0
Ceso4g01116 ACH 1 770 Primary Pumps ATPases gene family AT1G15690 87.662 0.0 1369.0
Ceso4g01391 . 1 70 Primary Pumps ATPases gene family AT5G55290 84.286 1.59e-39 122.0
Ceso4g01035 . 13 849 Primary Pumps ATPases gene family AT3G42640 70.856 0.0 1281.0
Ceso4g01817 ACH 15 821 Primary Pumps ATPases gene family AT2G21410 77.75 0.0 1316.0
Ceso4g01742 . 23 1030 Primary Pumps ATPases gene family AT3G63380 57.659 0.0 1120.0
Ceso4g01740 . 476 821 Primary Pumps ATPases gene family AT2G21410 75.532 0.0 591.0
Ceso4g02177 . 351 983 Primary Pumps ATPases gene family AT1G63440 38.991 3.49e-122 395.0
Ceso4g03631 ACH 5 104 Primary Pumps ATPases gene family AT4G23710 72.0 3.31e-44 137.0
Ceso4g04117 . 13 1193 Primary Pumps ATPases gene family AT1G68710 72.227 0.0 1802.0
Ceso4g04184 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 29.177 1.49e-29 120.0
Ceso4g04412 ACH 17 1212 Primary Pumps ATPases gene family AT1G59820 73.732 0.0 1906.0
Ceso3g00654 . 1 944 Primary Pumps ATPases gene family AT1G63440 74.974 0.0 1433.0
Ceso3g00753 . 46 979 Primary Pumps ATPases gene family AT1G63440 55.414 0.0 1052.0
Ceso3g01342 . 27 524 Primary Pumps ATPases gene family AT3G47950 70.158 0.0 625.0
Ceso3g01347 . 89 188 Primary Pumps ATPases gene family AT5G47030 31.0 5.13e-06 44.7
Ceso3g01561 . 1 956 Primary Pumps ATPases gene family AT5G62670 75.963 0.0 1445.0
Ceso3g01975 . 8 956 Primary Pumps ATPases gene family AT5G62670 75.649 0.0 1511.0
Ceso3g02866 . 1 934 Primary Pumps ATPases gene family AT5G44790 65.928 0.0 1265.0
Ceso3g02867 . 939 1001 Primary Pumps ATPases gene family AT5G44790 76.19 1.30e-18 80.9
Ceso3g02868 . 1 695 Primary Pumps ATPases gene family AT5G44790 64.135 0.0 908.0
Ceso3g03076 . 1 1058 Primary Pumps ATPases gene family AT4G29900 66.253 0.0 1454.0
Ceso3g03083 . 15 948 Primary Pumps ATPases gene family AT4G30190 87.059 0.0 1636.0
Ceso3g03253 . 6 852 Primary Pumps ATPases gene family AT3G42640 76.623 0.0 1303.0
Ceso3g03602 . 1 1021 Primary Pumps ATPases gene family AT3G57330 66.447 0.0 1442.0
Ceso3g03678 . 1 236 Primary Pumps ATPases gene family AT5G13450 52.632 7.57e-89 263.0
Ceso3g04256 . 46 979 Primary Pumps ATPases gene family AT1G63440 57.479 0.0 1071.0
Ceso2g00188 . 6 948 Primary Pumps ATPases gene family AT3G42640 76.166 0.0 1438.0
Ceso2g00731 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 92.771 2.77e-103 293.0
Ceso2g00846 ACH 6 960 Primary Pumps ATPases gene family AT3G47950 77.992 0.0 1575.0
Ceso2g00146 ACH 6 768 Primary Pumps ATPases gene family AT1G15690 88.598 0.0 1373.0
Ceso2g01590 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 76.42 0.0 1288.0
Ceso2g02731 . 1 1177 Primary Pumps ATPases gene family AT5G23630 75.573 0.0 1833.0
Ceso2g02662 . 58 437 Primary Pumps ATPases gene family AT1G20260 28.283 2.98e-28 116.0
Ceso2g02940 . 100 804 Primary Pumps ATPases gene family AT4G37270 70.822 0.0 1001.0
Ceso2g02941 . 100 167 Primary Pumps ATPases gene family AT4G37270 50.0 9.43e-16 72.0
Ceso2g02914 . 1 220 Primary Pumps ATPases gene family AT4G11150 65.909 8.01e-106 303.0
Ceso2g02971 . 1 1014 Primary Pumps ATPases gene family AT4G37640 77.854 0.0 1588.0
Ceso2g03413 . 6 576 Primary Pumps ATPases gene family AT3G47950 83.363 0.0 913.0
Ceso2g04312 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 28.928 7.19e-30 120.0
Ceso2g04427 ACH 22 1209 Primary Pumps ATPases gene family AT1G59820 71.92 0.0 1838.0
Ceso1g00085 . 1 1178 Primary Pumps ATPases gene family AT3G27870 73.165 0.0 1816.0
Ceso1g00300 . 3 1014 Primary Pumps ATPases gene family AT4G37640 75.53 0.0 1587.0
Ceso1g00312 . 172 1014 Primary Pumps ATPases gene family AT4G37640 77.88 0.0 1371.0
Ceso1g00841 . 1 1001 Primary Pumps ATPases gene family AT5G44790 73.379 0.0 1500.0
Ceso1g00813 ACH 20 1158 Primary Pumps ATPases gene family AT5G04930 69.676 0.0 1668.0
Ceso1g02377 . 52 851 Primary Pumps ATPases gene family AT1G16780 85.25 0.0 1402.0
Ceso1g02806 . 79 1007 Primary Pumps ATPases gene family AT3G63380 30.61 4.80e-129 427.0
Ceso1g03251 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Ceso1g03424 . 14 821 Primary Pumps ATPases gene family AT4G39080 73.424 0.0 1238.0
Ceso1g03418 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Ceso1g03575 . 1 1020 Primary Pumps ATPases gene family AT1G27770 76.167 0.0 1572.0
Ceso1g03820 . 1 487 Primary Pumps ATPases gene family AT4G38510 93.241 0.0 949.0
Ceso1g04147 ACH 369 960 Primary Pumps ATPases gene family AT3G47950 89.189 0.0 1100.0
Ceso1g04295 . 662 1114 Primary Pumps ATPases gene family AT1G17500 72.247 0.0 682.0
Ceso1g04296 . 302 547 Primary Pumps ATPases gene family AT1G17500 56.299 1.90e-80 260.0
Ceso1g04297 . 118 273 Primary Pumps ATPases gene family AT1G72700 62.42 7.11e-59 197.0
Ceso1g04460 . 1 1216 Primary Pumps ATPases gene family AT1G17500 71.783 0.0 1875.0
Ceso1g04496 . 227 606 Primary Pumps ATPases gene family AT3G21180 75.0 0.0 556.0
Ceso1g04495 . 24 152 Primary Pumps ATPases gene family AT5G57110 32.716 1.28e-15 73.2
Ceso1g04535 . 40 1085 Primary Pumps ATPases gene family AT3G21180 68.962 0.0 1456.0