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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01601 ATGGCGAAATCCCCTGCCAACGCAAGAAAAACCCTAACTTCTTATACCATCAAATCCATCGCCAAATCCATAAGACCGGGCGATTACGTGATGATGAGGGCGCCGGATCCATCGAAGCCGTACGTAGCAAAAGTGGCGAAGATCGTATCGGAAAACGGAGGAAGTAATAACGTGAAGGTTCACGTTCAATGGTACTACCGGCCGGAGGAAGTGGTTGGCGGTCGAAAACAGTTTCACGGAACGAAAGAGGTGTTCCTTTCCGATCACCTTGACGTTCAGGATGCGGATACGATTGAAGGAAAGTGTAAGGTTCACAGTTTCAAGAGCTATATGAAGCTCGATGCCATTGGTAACGACGATTTTTATTGTCGTTTTCGGTATAACTCTTCCACCGGAGAATTCAATCCCGATAGAATTGCCGTGTACTGCAAATGTGAGATGCCTTACAATCCTGATGACTTAATGATTCAGTGTGAAGGCTGCAGTGATTGGTTTCATCCTGCTTGTTTGGATATGACAGTGGAGGAGGCTAAACAGATTGGACACTTCTTGTGCCATGATTGTTTGTCACAAGACCAAAGAATTCACCAAACTTGTCATGCTATTTCCAGACCTGCAGTCATCAGGGTAGACACAAAGCGTCGTAGAATGTGA 654 45.72 MAKSPANARKTLTSYTIKSIAKSIRPGDYVMMRAPDPSKPYVAKVAKIVSENGGSNNVKVHVQWYYRPEEVVGGRKQFHGTKEVFLSDHLDVQDADTIEGKCKVHSFKSYMKLDAIGNDDFYCRFRYNSSTGEFNPDRIAVYCKCEMPYNPDDLMIQCEGCSDWFHPACLDMTVEEAKQIGHFLCHDCLSQDQRIHQTCHAISRPAVIRVDTKRRRM 217
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01601 217 SMART PHD-3 142 189 IPR001965 -
Ceso2g01601 217 Gene3D - 2 136 IPR043151 -
Ceso2g01601 217 ProSiteProfiles BAH domain profile. 22 138 IPR001025 GO:0003682(InterPro)
Ceso2g01601 217 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 137 203 IPR013083 -
Ceso2g01601 217 Pfam PHD-finger 143 188 IPR019787 -
Ceso2g01601 217 SUPERFAMILY FYVE-PHD zinc finger 130 191 IPR011011 -
Ceso2g01601 217 PANTHER OS08G0421900 PROTEIN 8 195 - -
Ceso2g01601 217 ProSitePatterns Zinc finger PHD-type signature. 143 188 IPR019786 -
Ceso2g01601 217 ProSiteProfiles Zinc finger PHD-type profile. 140 191 IPR019787 -
Ceso2g01601 217 SMART BAH-4 22 138 IPR001025 GO:0003682(InterPro)
Ceso2g01601 217 Pfam BAH domain 24 137 IPR001025 GO:0003682(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01601 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
40265 Ceso2g01601 Ceso8g01106
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:34003882 Ceso8g01106 Ceso-Chr8:15512316 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
CesoJARYMX010000249g00005 . 1 278 Core DNA Replication Machinery family AT3G02920 47.872 3.55e-87 259.0
Ceso8g00069 . 30 494 Core DNA Replication Machinery family AT5G63960 75.427 0.0 745.0
Ceso8g00280 . 196 560 Core DNA Replication Machinery family AT5G61000 21.372 1.02e-10 65.1
Ceso8g01106 ACH 245 341 Core DNA Replication Machinery family AT4G14700 26.263 6.32e-08 50.8
Ceso8g00948 . 1 193 Core DNA Replication Machinery family AT1G80190 57.513 2.80e-81 238.0
Ceso8g01016 . 337 433 Core DNA Replication Machinery family AT5G22010 32.203 8.05e-07 52.0
Ceso8g01133 . 286 602 Core DNA Replication Machinery family AT4G19130 23.193 1.77e-11 66.2
Ceso8g01101 . 1 847 Core DNA Replication Machinery family AT2G16440 66.858 0.0 1120.0
Ceso8g01802 . 1 638 Core DNA Replication Machinery family AT2G06510 70.063 0.0 931.0
Ceso8g01721 . 150 258 Core DNA Replication Machinery family AT5G08020 56.881 3.60e-41 141.0
Ceso8g01722 . 292 514 Core DNA Replication Machinery family AT5G08020 34.836 3.12e-33 129.0
Ceso8g02546 . 4 380 Core DNA Replication Machinery family AT4G29910 54.872 1.38e-140 410.0
Ceso8g02545 . 4 519 Core DNA Replication Machinery family AT4G29910 59.168 0.0 577.0
Ceso8g02537 . 4 519 Core DNA Replication Machinery family AT4G29910 61.407 0.0 613.0
Ceso7g00504 . 1 209 Core DNA Replication Machinery family AT3G12530 60.766 1.82e-92 268.0
Ceso7g00744 ACH 1 262 Core DNA Replication Machinery family AT2G25100 74.525 2.01e-149 422.0
Ceso7g01033 . 17 809 Core DNA Replication Machinery family AT4G14700 61.237 0.0 965.0
Ceso7g01076 . 1 354 Core DNA Replication Machinery family AT5G27740 87.288 0.0 661.0
Ceso7g01223 . 111 199 Core DNA Replication Machinery family AT4G02110 36.667 1.23e-13 72.0
Ceso7g01260 . 4 1522 Core DNA Replication Machinery family AT5G67100 57.116 0.0 1714.0
Ceso7g00631 . 235 515 Core DNA Replication Machinery family AT2G06510 24.15 2.19e-06 50.1
Ceso7g01570 ACH 1014 1267 Core DNA Replication Machinery family AT1G08840 30.515 1.74e-20 96.3
Ceso7g01568 ACH 1013 1267 Core DNA Replication Machinery family AT1G08840 27.338 6.10e-16 81.3
Ceso7g01132 . 145 251 Core DNA Replication Machinery family AT5G26680 38.318 2.90e-11 65.9
Ceso7g02421 . 13 328 Core DNA Replication Machinery family AT1G21690 25.656 3.92e-24 102.0
Ceso7g02988 . 18 526 Core DNA Replication Machinery family AT5G22110 64.469 0.0 711.0
Ceso6g00129 . 68 164 Core DNA Replication Machinery family AT2G24490 26.087 3.66e-06 44.3
Ceso6g00961 . 144 525 Core DNA Replication Machinery family AT5G08020 21.827 3.72e-11 63.9
Ceso6g02337 . 252 604 Core DNA Replication Machinery family AT5G08020 46.97 1.06e-115 348.0
Ceso6g02884 . 270 602 Core DNA Replication Machinery family AT4G19130 21.777 4.10e-08 56.6
Ceso6g03056 . 107 255 Core DNA Replication Machinery family AT2G31270 46.309 6.98e-28 117.0
Ceso6g03049 . 4 124 Core DNA Replication Machinery family AT1G09815 51.22 1.15e-40 130.0
Ceso6g03048 . 25 733 Core DNA Replication Machinery family AT5G16690 48.682 0.0 654.0
Ceso6g03215 . 883 1294 Core DNA Replication Machinery family AT1G08840 27.083 3.00e-37 150.0
Ceso5g01414 . 1 716 Core DNA Replication Machinery family AT4G02060 83.287 0.0 1261.0
Ceso5g01264 . 150 444 Core DNA Replication Machinery family AT5G08020 52.698 3.33e-110 330.0
Ceso5g01265 . 446 547 Core DNA Replication Machinery family AT5G08020 32.031 2.25e-14 68.6
Ceso5g01834 . 934 1269 Core DNA Replication Machinery family AT1G08840 26.579 1.60e-22 101.0
Ceso5g02365 . 29 727 Core DNA Replication Machinery family AT2G07690 76.671 0.0 1083.0
Ceso5g02174 ACH 184 269 Core DNA Replication Machinery family AT1G77320 31.579 2.15e-07 52.0
Ceso5g02208 . 406 763 Core DNA Replication Machinery family AT1G08130 26.531 2.09e-25 111.0
Ceso5g03166 . 1 369 Core DNA Replication Machinery family AT1G77470 52.878 7.72e-152 434.0
Ceso5g03307 . 4 575 Core DNA Replication Machinery family AT1G67630 49.663 0.0 564.0
Ceso5g03633 . 1 410 Core DNA Replication Machinery family AT2G01120 64.878 0.0 557.0
Ceso5g03733 . 12 332 Core DNA Replication Machinery family AT1G63160 91.9 0.0 620.0
Ceso4g00027 . 163 509 Core DNA Replication Machinery family AT5G08020 22.281 2.34e-07 50.8
Ceso4g00958 . 163 509 Core DNA Replication Machinery family AT5G08020 23.016 7.68e-07 49.3
Ceso4g01504 . 235 378 Core DNA Replication Machinery family AT2G06510 28.378 2.57e-06 48.9
Ceso4g01757 . 245 341 Core DNA Replication Machinery family AT4G14700 32.323 5.60e-10 57.0
Ceso4g02158 . 12 643 Core DNA Replication Machinery family AT2G14050 68.069 0.0 878.0
Ceso4g02164 . 181 584 Core DNA Replication Machinery family AT5G61000 20.863 6.79e-09 56.6
Ceso4g02745 . 1 318 Core DNA Replication Machinery family AT5G26680 26.807 2.84e-19 89.0
Ceso4g04087 . 977 1268 Core DNA Replication Machinery family AT1G08840 29.739 1.19e-18 92.0
Ceso4g04175 . 1 182 Core DNA Replication Machinery family AT3G55490 60.989 5.60e-81 237.0
Ceso4g04032 ACH 1015 1267 Core DNA Replication Machinery family AT1G08840 32.707 2.57e-22 103.0
Ceso4g04034 ACH 1018 1268 Core DNA Replication Machinery family AT1G08840 30.682 1.06e-18 90.1
Ceso4g04376 . 177 277 Core DNA Replication Machinery family AT1G26840 56.604 2.90e-29 104.0
Ceso4g04568 . 1 443 Core DNA Replication Machinery family AT1G67320 68.805 0.0 667.0
Ceso3g00066 . 1 2156 Core DNA Replication Machinery family AT1G08260 69.124 0.0 3150.0
Ceso3g00250 . 456 764 Core DNA Replication Machinery family AT3G09660 67.836 2.00e-151 443.0
Ceso3g01108 . 1 451 Core DNA Replication Machinery family AT5G41880 65.427 0.0 636.0
Ceso3g01280 . 169 572 Core DNA Replication Machinery family AT5G08020 21.635 8.54e-17 81.3
Ceso3g01470 . 888 1290 Core DNA Replication Machinery family AT1G08840 30.853 5.18e-38 153.0
Ceso3g01780 . 19 260 Core DNA Replication Machinery family AT5G26680 27.459 6.39e-19 87.8
Ceso3g02346 . 831 1269 Core DNA Replication Machinery family AT1G08840 28.664 3.51e-35 143.0
Ceso3g02476 . 276 1083 Core DNA Replication Machinery family AT5G63960 28.108 5.77e-84 298.0
Ceso3g02600 . 153 395 Core DNA Replication Machinery family AT5G08020 28.049 1.06e-23 100.0
Ceso3g04299 . 48 790 Core DNA Replication Machinery family AT1G08130 67.241 0.0 1039.0
Ceso3g04279 . 203 540 Core DNA Replication Machinery family AT5G08020 20.29 4.41e-08 56.6
Ceso3g04416 . 141 521 Core DNA Replication Machinery family AT5G08020 22.0 2.66e-10 63.5
Ceso2g00194 . 35 504 Core DNA Replication Machinery family AT1G07270 55.925 0.0 518.0
Ceso2g00781 . 1 601 Core DNA Replication Machinery family AT5G08020 66.83 0.0 862.0
Ceso2g00607 . 12 361 Core DNA Replication Machinery family AT2G37560 65.527 7.72e-176 491.0
Ceso2g00793 . 1 203 Core DNA Replication Machinery family AT5G08020 64.186 9.56e-95 287.0
Ceso2g01161 . 1014 1294 Core DNA Replication Machinery family AT1G08840 29.153 5.09e-19 92.0
Ceso2g01248 . 17 396 Core DNA Replication Machinery family AT2G20980 50.376 8.96e-125 364.0
Ceso2g01601 ACH 263 337 Core DNA Replication Machinery family AT4G14700 28.0 8.61e-06 44.3
Ceso2g01951 . 934 1289 Core DNA Replication Machinery family AT1G08840 26.866 3.18e-25 110.0
Ceso2g02542 . 2 320 Core DNA Replication Machinery family AT5G27740 34.557 1.54e-54 190.0
Ceso2g02661 . 233 776 Core DNA Replication Machinery family AT1G08130 35.556 1.65e-123 403.0
Ceso2g03014 . 199 554 Core DNA Replication Machinery family AT5G08020 22.051 2.76e-08 55.5
Ceso2g03224 . 1 801 Core DNA Replication Machinery family AT1G79150 53.44 0.0 841.0
Ceso2g03373 . 150 598 Core DNA Replication Machinery family AT5G08020 54.12 0.0 526.0
Ceso2g03803 . 9 287 Core DNA Replication Machinery family AT1G21690 22.483 1.30e-12 68.2
Ceso2g03994 . 1 275 Core DNA Replication Machinery family AT1G26840 65.468 7.82e-124 352.0
Ceso2g04203 . 827 1288 Core DNA Replication Machinery family AT1G08840 31.395 9.94e-47 176.0
Ceso1g00882 . 1 828 Core DNA Replication Machinery family AT5G44635 72.663 0.0 1259.0
Ceso1g00934 . 235 378 Core DNA Replication Machinery family AT2G06510 27.703 2.05e-06 46.2
Ceso1g00957 . 1 539 Core DNA Replication Machinery family AT2G31270 39.895 1.56e-92 295.0
Ceso1g01277 . 190 569 Core DNA Replication Machinery family AT5G08020 22.051 5.20e-13 72.8
Ceso1g01210 . 35 504 Core DNA Replication Machinery family AT1G07270 59.544 0.0 565.0
Ceso1g01626 . 1 774 Core DNA Replication Machinery family AT5G46280 68.286 0.0 1063.0
Ceso1g01875 . 1 272 Core DNA Replication Machinery family AT5G26680 27.798 3.77e-19 89.0
Ceso1g01992 . 169 591 Core DNA Replication Machinery family AT5G08020 22.5 7.88e-15 74.7
Ceso1g04234 . 153 583 Core DNA Replication Machinery family AT5G08020 23.898 1.01e-31 126.0
Ceso1g04541 . 1014 1289 Core DNA Replication Machinery family AT1G08840 30.363 2.25e-21 100.0
Ceso1g03665 . 1 339 Core DNA Replication Machinery family AT1G21690 75.637 0.0 556.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ceso BAH 2.4e-22 No_clan TR PHD