AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01608 ATGGGGTCTGCATGTTGTGTTGCTGCTAGGGATAGAACCATTACAGATCAATCCGTTAGTGATGTTATGCCAAGGAATGATCGGTATTCGCCGTCGTGGAGTTTTCGCTGGGATAACCGAGGGCGCGTAGCAGGTGAAGAGTCGTCCATGAATTGCTTTTCAGATGGTGCTGGTATGAATAATAGGTTGGACAATAAATCTCATACAACTGTAGGAACTGCTCATGCAACAGAAGAAGGCAGTCCATTAGACAGTTCTAGAAGTCTTACCTGGCAGAAGTCGCCACCTTCTGAAGAAAATGGAGCTCCTCAGTCAGTATGGAGTGAGCCTTTCTTTAACAACTCCTTTCGTCTAAATGTTAGAGATCATGAGATATTCTCAAATGGCAGCGAATCTTTTGAGCTATGGCTTGAAAGACTCAAGTATAAAGTGCAGCCTTTTATGTTTGGAAAGTTCTATCTCAGGTATCAAATCAGAGATCCACCTATTTTGAATATACTTCCAGCTATAAAACAGCTACAACGCATCAGTTTAGGTGTGATTAAGACAGATGAAAGAGCAACCAAGTTTAATGACCCAAGTTCACAATTTCATGGGAACTTACAACTCTTTACTGCTAAGCACTTGTCCTGGTGTATGCTGCTTTCTGCAGTAATCTGTACAGCATTTGCTTCTGCGTCATCTATATATCCATTGAACTCTAAGAATCTTCCCGAGGGGAAGGAGACAAGGAGAACTCAGGTAGCTTTGGAACTGTCTCCAACCAAAATTTTAACTCCAACGCATTCGGTTTCATCCTTTTCGGCGTCTCCTTTGTCTTCTTCCCAAGGACATCTTATGCCCCTAACAAGCTTGACCCCATCAAGGTGGCCTCGCCGTTCCCCAGGACACCATCTACTACGTCAAGTATCAGATAGCCGAATCCGTGGCATAATGTCACCTAATTTTTCGATATCGGAGGAGGGTTCTCCTTTTATGCACCCTGGGTGGAGCAATAAATCACACAGGGGTTCTCATGGTGGATCTTCAGATGGTTGGTCTATACCTGCCTTTCCTGAGCTCGCGACAACTTCTAACAGAGACAGATGGTCTTTCGATAGCGATTCTCTCAGTTTTAGTCGTGATAGGATTAGCAGATCAAGTGGCCGGGTTTCTTCCTCCCCTTCCATTGATATGCAGATGTGTGGTGTCTGCTCCAAACTTTTAACCGAAAAATCTGTTTGGAGAGGCCAAAAAGGCATCGTTGCCAATGGGTACCCTATTGTTGCTGTTCTATATTGTGGCCATGTTTACCATGCAGAATGTTTAGAGAGTATGACCCCTGAGATAAACACGCATGATCCAGCGTGCCCGGTTTGTACTTTTGGGGAGAAAAAGGTTCTCAAGTTGTCGGAAAAAGCACTTGCGACAGACATGGATTTGAAGGCTAAAATCAGCAAGAAGTTAAGGAATCGGTCAGTGGATGGTGGTGATTCTGTTGTGTTTAAGAATAGTGGGTCCAGGATGGGTTCAAGTTCCAGCATGAAGAGCTCTACAGGAAGTGGAAAGCCATTCTTAAAGAGACACTTCTCTTTCGGCAACAAATGGAGCAGATCCTTGTCAGACAACAGTAGTAGGAAAAAGAGATTTTTCTGGACAAAATCAAGCAAGGAGTGA 1656 44.02 MGSACCVAARDRTITDQSVSDVMPRNDRYSPSWSFRWDNRGRVAGEESSMNCFSDGAGMNNRLDNKSHTTVGTAHATEEGSPLDSSRSLTWQKSPPSEENGAPQSVWSEPFFNNSFRLNVRDHEIFSNGSESFELWLERLKYKVQPFMFGKFYLRYQIRDPPILNILPAIKQLQRISLGVIKTDERATKFNDPSSQFHGNLQLFTAKHLSWCMLLSAVICTAFASASSIYPLNSKNLPEGKETRRTQVALELSPTKILTPTHSVSSFSASPLSSSQGHLMPLTSLTPSRWPRRSPGHHLLRQVSDSRIRGIMSPNFSISEEGSPFMHPGWSNKSHRGSHGGSSDGWSIPAFPELATTSNRDRWSFDSDSLSFSRDRISRSSGRVSSSPSIDMQMCGVCSKLLTEKSVWRGQKGIVANGYPIVAVLYCGHVYHAECLESMTPEINTHDPACPVCTFGEKKVLKLSEKALATDMDLKAKISKKLRNRSVDGGDSVVFKNSGSRMGSSSSMKSSTGSGKPFLKRHFSFGNKWSRSLSDNSSRKKRFFWTKSSKE 551
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01608 551 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 376 455 IPR013083 -
Ceso2g01608 551 SUPERFAMILY RING-U-box 388 454 - -
Ceso2g01608 551 CDD RING-H2 395 453 - -
Ceso2g01608 551 MobiDBLite consensus disorder prediction 61 106 - -
Ceso2g01608 551 MobiDBLite consensus disorder prediction 534 551 - -
Ceso2g01608 551 PANTHER EXPRESSED PROTEIN 1 459 - -
Ceso2g01608 551 MobiDBLite consensus disorder prediction 493 551 - -
Ceso2g01608 551 SMART ring-2 395 453 IPR001841 -
Ceso2g01608 551 ProSiteProfiles Zinc finger RING-type profile. 395 454 IPR001841 -
Ceso2g01608 551 MobiDBLite consensus disorder prediction 322 343 - -
Ceso2g01608 551 MobiDBLite consensus disorder prediction 493 514 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01608 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
40266 Ceso2g01608 Ceso4g01825
40267 Ceso2g01608 Ceso8g01108
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:34109534 Ceso4g01825 Ceso-Chr4:32894611 wgd
Ceso Ceso-Chr2:34109534 Ceso8g01108 Ceso-Chr8:15547292 wgd