AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01617 ATGGCGGCCGCTTCTTCTTCTTCCCATCTTCACCTCCAATCCCTTTCCTTCACCAAAACCCTAAACCAACCTCCCAATTCAATCACACCCAAAACCCTAATTTCCTTCAAACCCAATTCCAAAACCCTAGGTAAAATCAGAGCAGTCATATCTCAAAAAACACCTCCAGCAACCCAGAAATTCGACCACTGTTTCACCAAGAAAGAAGATGGGTATTTGTACTGTGAGAATCTTAAGGTTCAAGAAGTCATGGAGGTGGTTGAAAAGAGGCCTTTTTACCTTTACAGTAAGCCTCAGATAACTAGAAATGTGGAGGCTTATAAGGATGCTTTGGAGGGTCTGAATTCGATAATTGGGTATGCGATTAAGGCCAATAATAACTTCATGATTTTGCAGCATTTGAGGAGTTTGGGGTGTGGGGCTGTTTTGGTTAGTGGGAATGAGCTTAGGTTGGCTCTTCTTGCTGGTTTTGATCCCACCAGGTGTATTTTTAATGGAAATGGGAAGCTTTTGGAGGATCTTGTTCTTGCTGCACAAGAAGGTGTATTTGTTAACATAGACAGTGAGTTTGATTTGGATAATATTGTATCAGCTGCAAGAATTGCTGGAAAGAAGGTCAATGTACTCCTTCGAATCAATCCCGATGTTGACCCTCAGGTTCATCCCTATGTTGCAACTGGGAACAAGAACTCCAAATTTGGTATAAGAAACGAGAAGTTGCAATGGTTTCTAGATGCCGTGAAGTCGTATCCTGATGAACTTAAGCTAGTTGGGGCTCATTGCCATCTTGGATCCACCATTACCAAGGTTGACATTTTCAGGGATGCTGCAGCCATTATGGTGAAGTTCATTGATGAGATTCGAGCTCAAGGGTTTGACATTAATTACTTGAACATTGGAGGTGGTCTTGGGATTGATTATTATCATACCGGCACCGTACTTCCTACACCTAGAGATCTCATCGACACAGTCCGGGAGCTAGTCTTGTCTCGAAACCTTAATCTGATTATCGAACCCGGGAGGTCACTGATTGCGAATACTTGCTGTTTTGTTAATCGTGTCACTGGTGTAAAAACGAATGGTACGAAAAACTTCATTGTGATCGATGGCAGCATGGCCGAACTTATCCGTCCTAGCTTATACGATGCTTATCAACACATAGAACTGGTTTCTCCGCCACCGCCCGAGTCTGCGGTTTCAACTTTTGACGTCGTGGGCCCGGTCTGTGAGTCAGCCGATTTTTTGGGGAAAAACAGGGAACTTCCAGCTCCAGCCAGGGATTCTGGGCTTGTGGTTCATGATGCGGGTGCCTACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCAGAATACTGGGTTGAGGAAGATGGATCAGTGGCCAAAATCAGGCATGGGGAGACTTTTGAAGATCATATGAGATTCTTTGAGGGACTCTCAATCTAA 1455 44.33 MAAASSSSHLHLQSLSFTKTLNQPPNSITPKTLISFKPNSKTLGKIRAVISQKTPPATQKFDHCFTKKEDGYLYCENLKVQEVMEVVEKRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNFMILQHLRSLGCGAVLVSGNELRLALLAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRAQGFDINYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPESAVSTFDVVGPVCESADFLGKNRELPAPARDSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVAKIRHGETFEDHMRFFEGLSI 484
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01617 484 NCBIfam diaminopimelate decarboxylase 67 476 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ceso2g01617 484 CDD PLPDE-III-DapDC 91 457 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ceso2g01617 484 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 99 345 IPR022644 GO:0003824(InterPro)
Ceso2g01617 484 FunFam Diaminopimelate decarboxylase 97 342 - -
Ceso2g01617 484 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 90 476 IPR009006 GO:0003824(InterPro)
Ceso2g01617 484 SUPERFAMILY Alanine racemase C-terminal domain-like 320 477 IPR009006 GO:0003824(InterPro)
Ceso2g01617 484 FunFam Diaminopimelate decarboxylase 333 476 - -
Ceso2g01617 484 PANTHER DIAMINOPIMELATE DECARBOXYLASE 57 479 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Ceso2g01617 484 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 346 436 IPR022643 GO:0003824(InterPro)
Ceso2g01617 484 Gene3D Alanine racemase 97 342 IPR029066 -
Ceso2g01617 484 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 289 304 IPR022657 -
Ceso2g01617 484 SUPERFAMILY PLP-binding barrel 90 346 IPR029066 -
Ceso2g01617 484 PRINTS Diaminopimelate decarboxylase signature 446 468 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ceso2g01617 484 PRINTS Diaminopimelate decarboxylase signature 138 155 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ceso2g01617 484 PRINTS Diaminopimelate decarboxylase signature 226 235 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ceso2g01617 484 PRINTS Diaminopimelate decarboxylase signature 363 381 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ceso2g01617 484 Hamap Diaminopimelate decarboxylase [lysA]. 80 480 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ceso2g01617 484 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 120 138 IPR022653 -
Ceso2g01617 484 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 120 138 IPR000183 GO:0003824(InterPro)
Ceso2g01617 484 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 140 152 IPR000183 GO:0003824(InterPro)
Ceso2g01617 484 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 335 354 IPR000183 GO:0003824(InterPro)
Ceso2g01617 484 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 436 449 IPR000183 GO:0003824(InterPro)
Ceso2g01617 484 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 253 266 IPR000183 GO:0003824(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01617 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]