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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01627 ATGGTTGAATATCCCATCGACCCAGAAGTTGCAACCGTGAAGGGAGATTTATGTAAGAAGGCAAGGAGGACATGGTCCGAAAACTACGGCAACACAAGACATTGTGATGACCAGTGCAAGGTTTGGGAGGGTGCAACATATGGAGCTTGTCACACCTACAATAACAAACACATATGGTTTTACTACTTCAATTGTCCCAAAGCTGAGAAGCTCGCTCAGCCTAATGTGAAAGCTAAAAAGCTCTCCCGAGAAAAGATTGAAGTGGAAAAAGTGCTACATCTTGAGCATCCGATTGGACCCATCTATCATCCTTAA 315 43.81 MVEYPIDPEVATVKGDLCKKARRTWSENYGNTRHCDDQCKVWEGATYGACHTYNNKHIWFYYFNCPKAEKLAQPNVKAKKLSREKIEVEKVLHLEHPIGPIYHP 104
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01627 104 Gene3D - 17 65 IPR036574 -
Ceso2g01627 104 SUPERFAMILY Scorpion toxin-like 17 65 IPR036574 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01627 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:34544713 Ceso2g01641 Ceso-Chr2:34894780 dispersed
Ceso Ceso-Chr2:34544713 Ceso4g01836 Ceso-Chr4:33084638 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ceso8g00040 . 1 73 Plant Defensins gene family AT5G63660 54.795 8.11e-25 88.6
Ceso5g03713 . 20 77 Plant Defensins gene family AT2G02100 67.241 5.14e-22 79.7
Ceso4g01836 . 2 78 Plant Defensins gene family AT1G19610 51.25 3.83e-26 90.1
Ceso4g01837 . 29 78 Plant Defensins gene family AT1G19610 66.0 6.40e-22 80.5
Ceso4g01907 . 29 74 Plant Defensins gene family AT1G19610 43.478 1.12e-09 49.3
Ceso4g04037 . 5 77 Plant Defensins gene family AT2G02100 64.865 1.65e-28 95.5
Ceso4g04036 . 1 77 Plant Defensins gene family AT2G02100 64.103 4.83e-30 99.8
Ceso2g01640 . 9 78 Plant Defensins gene family AT1G19610 52.857 3.50e-24 94.7
Ceso2g01641 . 1 77 Plant Defensins gene family AT1G19610 52.564 7.06e-25 88.2
Ceso2g01627 . 20 78 Plant Defensins gene family AT1G19610 45.763 1.67e-14 61.2
Ceso2g01638 . 8 78 Plant Defensins gene family AT1G19610 41.667 6.97e-17 68.9
Ceso2g01635 . 26 78 Plant Defensins gene family AT1G19610 54.717 1.08e-16 66.6
Ceso2g01636 . 7 78 Plant Defensins gene family AT1G19610 47.222 1.31e-19 75.9
Ceso2g01634 . 7 78 Plant Defensins gene family AT1G19610 47.222 2.51e-21 79.3
Ceso2g01639 . 1 78 Plant Defensins gene family AT1G19610 41.772 3.84e-16 67.4
Ceso2g01637 . 9 78 Plant Defensins gene family AT1G19610 47.143 1.89e-19 74.3